Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC15.52■□□□□ 0.08
NEK3P51956 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC15.52■□□□□ 0.08
NEK3P51956 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC15.52■□□□□ 0.08
NEK3P51956 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC15.52■□□□□ 0.08
NEK3P51956 AP005482.1-201ENST00000563722 1273 ntBASIC15.52■□□□□ 0.08
NEK3P51956 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC15.52■□□□□ 0.08
NEK3P51956 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC15.52■□□□□ 0.08
NEK3P51956 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
NEK3P51956 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
NEK3P51956 BX539320.1-201ENST00000623759 877 ntBASIC15.52■□□□□ 0.08
NEK3P51956 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
NEK3P51956 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC15.52■□□□□ 0.08
NEK3P51956 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.07
NEK3P51956 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC15.52■□□□□ 0.07
NEK3P51956 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
NEK3P51956 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
NEK3P51956 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
NEK3P51956 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC15.52■□□□□ 0.07
NEK3P51956 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
NEK3P51956 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC15.52■□□□□ 0.07
NEK3P51956 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
NEK3P51956 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC15.52■□□□□ 0.07
NEK3P51956 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
NEK3P51956 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC15.52■□□□□ 0.07
NEK3P51956 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC15.52■□□□□ 0.07
NEK3P51956 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
NEK3P51956 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
NEK3P51956 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
NEK3P51956 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
NEK3P51956 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC15.51■□□□□ 0.07
NEK3P51956 MTHFR-210ENST00000641407 2387 ntBASIC15.51■□□□□ 0.07
NEK3P51956 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
NEK3P51956 MSTO2P-201ENST00000314835 1709 ntBASIC15.51■□□□□ 0.07
NEK3P51956 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
NEK3P51956 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC15.51■□□□□ 0.07
NEK3P51956 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
NEK3P51956 MIR600HG-201ENST00000449175 5984 ntBASIC15.51■□□□□ 0.07
NEK3P51956 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC15.51■□□□□ 0.07
NEK3P51956 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC15.51■□□□□ 0.07
NEK3P51956 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC15.51■□□□□ 0.07
NEK3P51956 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
NEK3P51956 TP73-213ENST00000604479 1623 ntTSL 5 BASIC15.51■□□□□ 0.07
NEK3P51956 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
NEK3P51956 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC15.51■□□□□ 0.07
NEK3P51956 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC15.51■□□□□ 0.07
NEK3P51956 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC15.51■□□□□ 0.07
NEK3P51956 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
NEK3P51956 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC15.51■□□□□ 0.07
NEK3P51956 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
NEK3P51956 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC15.51■□□□□ 0.07
NEK3P51956 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC15.51■□□□□ 0.07
NEK3P51956 AC104989.1-201ENST00000519711 778 ntBASIC15.51■□□□□ 0.07
NEK3P51956 RPL28-206ENST00000558752 671 ntTSL 3 BASIC15.51■□□□□ 0.07
NEK3P51956 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC15.51■□□□□ 0.07
NEK3P51956 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
NEK3P51956 AC133552.6-201ENST00000613406 534 ntBASIC15.51■□□□□ 0.07
NEK3P51956 AP005019.2-201ENST00000615104 511 ntBASIC15.51■□□□□ 0.07
NEK3P51956 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC15.51■□□□□ 0.07
NEK3P51956 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC15.51■□□□□ 0.07
NEK3P51956 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
NEK3P51956 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC15.51■□□□□ 0.07
NEK3P51956 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
NEK3P51956 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC15.51■□□□□ 0.07
NEK3P51956 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
NEK3P51956 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
NEK3P51956 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
NEK3P51956 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
NEK3P51956 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
NEK3P51956 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
NEK3P51956 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC15.5■□□□□ 0.07
NEK3P51956 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NEK3P51956 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NEK3P51956 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NEK3P51956 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NEK3P51956 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC15.5■□□□□ 0.07
NEK3P51956 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NEK3P51956 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC15.5■□□□□ 0.07
NEK3P51956 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
NEK3P51956 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
NEK3P51956 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
NEK3P51956 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NEK3P51956 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
NEK3P51956 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NEK3P51956 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NEK3P51956 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC15.5■□□□□ 0.07
NEK3P51956 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC15.5■□□□□ 0.07
NEK3P51956 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
NEK3P51956 PDIA3P1-201ENST00000471856 1510 ntBASIC15.5■□□□□ 0.07
NEK3P51956 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
NEK3P51956 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
NEK3P51956 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NEK3P51956 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC15.5■□□□□ 0.07
NEK3P51956 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC15.5■□□□□ 0.07
NEK3P51956 PGGT1BP2-201ENST00000398621 1028 ntBASIC15.5■□□□□ 0.07
NEK3P51956 KRT223P-202ENST00000449164 1292 ntBASIC15.5■□□□□ 0.07
NEK3P51956 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC15.5■□□□□ 0.07
NEK3P51956 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC15.5■□□□□ 0.07
NEK3P51956 KRT18P25-201ENST00000508931 1278 ntBASIC15.5■□□□□ 0.07
NEK3P51956 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
NEK3P51956 SNX29P1-201ENST00000548357 1007 ntBASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms