Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN9P43378 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC15.56■□□□□ 0.08
PTPN9P43378 AP003171.2-201ENST00000528208 925 ntBASIC15.56■□□□□ 0.08
PTPN9P43378 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC15.56■□□□□ 0.08
PTPN9P43378 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC15.56■□□□□ 0.08
PTPN9P43378 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC15.56■□□□□ 0.08
PTPN9P43378 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN9P43378 BX088702.1-201ENST00000610784 235 ntBASIC15.56■□□□□ 0.08
PTPN9P43378 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN9P43378 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN9P43378 AC138951.2-201ENST00000623455 1161 ntBASIC15.56■□□□□ 0.08
PTPN9P43378 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC15.56■□□□□ 0.08
PTPN9P43378 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN9P43378 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC15.56■□□□□ 0.08
PTPN9P43378 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC15.56■□□□□ 0.08
PTPN9P43378 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN9P43378 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN9P43378 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN9P43378 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC15.56■□□□□ 0.08
PTPN9P43378 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN9P43378 AC020910.5-201ENST00000623668 1865 ntBASIC15.56■□□□□ 0.08
PTPN9P43378 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN9P43378 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN9P43378 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
PTPN9P43378 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
PTPN9P43378 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN9P43378 AC005912.2-201ENST00000619492 2400 ntBASIC15.56■□□□□ 0.08
PTPN9P43378 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN9P43378 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
PTPN9P43378 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN9P43378 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN9P43378 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN9P43378 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN9P43378 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC15.56■□□□□ 0.08
PTPN9P43378 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN9P43378 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN9P43378 AC063926.3-201ENST00000624734 5658 ntBASIC15.56■□□□□ 0.08
PTPN9P43378 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN9P43378 PKD1P5-201ENST00000532415 10291 ntBASIC15.56■□□□□ 0.08
PTPN9P43378 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN9P43378 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
PTPN9P43378 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN9P43378 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC15.55■□□□□ 0.08
PTPN9P43378 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN9P43378 AGGF1P1-201ENST00000509500 2073 ntBASIC15.55■□□□□ 0.08
PTPN9P43378 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
PTPN9P43378 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN9P43378 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN9P43378 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC15.55■□□□□ 0.08
PTPN9P43378 AL136172.1-201ENST00000598590 1394 ntBASIC15.55■□□□□ 0.08
PTPN9P43378 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN9P43378 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN9P43378 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN9P43378 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN9P43378 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN9P43378 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC15.55■□□□□ 0.08
PTPN9P43378 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC15.55■□□□□ 0.08
PTPN9P43378 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN9P43378 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC15.55■□□□□ 0.08
PTPN9P43378 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN9P43378 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN9P43378 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
PTPN9P43378 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN9P43378 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC15.55■□□□□ 0.08
PTPN9P43378 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN9P43378 AC022447.6-201ENST00000515522 438 ntBASIC15.55■□□□□ 0.08
PTPN9P43378 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC15.55■□□□□ 0.08
PTPN9P43378 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
PTPN9P43378 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC15.55■□□□□ 0.08
PTPN9P43378 PFAS-212ENST00000625942 396 ntTSL 5 BASIC15.55■□□□□ 0.08
PTPN9P43378 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
PTPN9P43378 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN9P43378 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN9P43378 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN9P43378 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN9P43378 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN9P43378 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC15.55■□□□□ 0.08
PTPN9P43378 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN9P43378 AC007686.3-201ENST00000619017 3487 ntBASIC15.55■□□□□ 0.08
PTPN9P43378 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC15.55■□□□□ 0.08
PTPN9P43378 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN9P43378 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
PTPN9P43378 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PTPN9P43378 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC15.54■□□□□ 0.08
PTPN9P43378 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC15.54■□□□□ 0.08
PTPN9P43378 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
PTPN9P43378 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PTPN9P43378 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PTPN9P43378 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PTPN9P43378 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
PTPN9P43378 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
PTPN9P43378 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC15.54■□□□□ 0.08
PTPN9P43378 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
PTPN9P43378 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PTPN9P43378 GZMB-202ENST00000382540 816 ntTSL 5 BASIC15.54■□□□□ 0.08
PTPN9P43378 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
PTPN9P43378 USB1-202ENST00000423271 1217 ntTSL 2 BASIC15.54■□□□□ 0.08
PTPN9P43378 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC15.54■□□□□ 0.08
PTPN9P43378 RPL7P3-201ENST00000441388 714 ntBASIC15.54■□□□□ 0.08
PTPN9P43378 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms