Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SOX3P41225 BAATP1-201ENST00000412284 1225 ntBASIC14.2□□□□□ -0.14
SOX3P41225 HIST1H2BPS3-201ENST00000419683 341 ntBASIC14.2□□□□□ -0.14
SOX3P41225 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC14.2□□□□□ -0.14
SOX3P41225 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC14.2□□□□□ -0.14
SOX3P41225 ATP5G2P4-201ENST00000442175 420 ntBASIC14.2□□□□□ -0.14
SOX3P41225 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SOX3P41225 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC14.2□□□□□ -0.14
SOX3P41225 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
SOX3P41225 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC14.2□□□□□ -0.14
SOX3P41225 NOP2-220ENST00000545915 630 ntTSL 2 BASIC14.2□□□□□ -0.14
SOX3P41225 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC14.2□□□□□ -0.14
SOX3P41225 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC14.2□□□□□ -0.14
SOX3P41225 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC14.2□□□□□ -0.14
SOX3P41225 ORC6-206ENST00000568364 888 ntTSL 5 BASIC14.2□□□□□ -0.14
SOX3P41225 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
SOX3P41225 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SOX3P41225 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SOX3P41225 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SOX3P41225 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
SOX3P41225 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
SOX3P41225 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC14.2□□□□□ -0.14
SOX3P41225 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC14.2□□□□□ -0.14
SOX3P41225 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
SOX3P41225 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC14.2□□□□□ -0.14
SOX3P41225 TK2-221ENST00000620035 5060 ntTSL 2 BASIC14.2□□□□□ -0.14
SOX3P41225 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
SOX3P41225 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
SOX3P41225 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SOX3P41225 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SOX3P41225 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC14.2□□□□□ -0.14
SOX3P41225 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC14.2□□□□□ -0.14
SOX3P41225 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC14.2□□□□□ -0.14
SOX3P41225 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC14.2□□□□□ -0.14
SOX3P41225 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
SOX3P41225 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
SOX3P41225 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
SOX3P41225 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SOX3P41225 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC14.19□□□□□ -0.14
SOX3P41225 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
SOX3P41225 AC134312.5-201ENST00000568031 1313 ntBASIC14.19□□□□□ -0.14
SOX3P41225 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
SOX3P41225 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SOX3P41225 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC14.19□□□□□ -0.14
SOX3P41225 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SOX3P41225 AC079781.5-202ENST00000641784 3743 ntBASIC14.19□□□□□ -0.14
SOX3P41225 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SOX3P41225 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC14.19□□□□□ -0.14
SOX3P41225 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
SOX3P41225 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SOX3P41225 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC14.19□□□□□ -0.14
SOX3P41225 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC14.19□□□□□ -0.14
SOX3P41225 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
SOX3P41225 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
SOX3P41225 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC14.19□□□□□ -0.14
SOX3P41225 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SOX3P41225 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC14.19□□□□□ -0.14
SOX3P41225 RPL5P21-201ENST00000404620 815 ntBASIC14.19□□□□□ -0.14
SOX3P41225 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC14.19□□□□□ -0.14
SOX3P41225 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC14.19□□□□□ -0.14
SOX3P41225 AC234783.1-201ENST00000441761 496 ntBASIC14.19□□□□□ -0.14
SOX3P41225 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC14.19□□□□□ -0.14
SOX3P41225 AL355864.2-201ENST00000447420 863 ntBASIC14.19□□□□□ -0.14
SOX3P41225 BCRP2-202ENST00000447763 634 ntBASIC14.19□□□□□ -0.14
SOX3P41225 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC14.19□□□□□ -0.14
SOX3P41225 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC14.19□□□□□ -0.14
SOX3P41225 CROCCP4-201ENST00000457096 498 ntBASIC14.19□□□□□ -0.14
SOX3P41225 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SOX3P41225 BCRP6-201ENST00000510112 632 ntBASIC14.19□□□□□ -0.14
SOX3P41225 BCRP7-201ENST00000511549 544 ntBASIC14.19□□□□□ -0.14
SOX3P41225 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC14.19□□□□□ -0.14
SOX3P41225 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC14.19□□□□□ -0.14
SOX3P41225 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC14.19□□□□□ -0.14
SOX3P41225 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC14.19□□□□□ -0.14
SOX3P41225 AL512343.1-201ENST00000605837 169 ntBASIC14.19□□□□□ -0.14
SOX3P41225 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC14.19□□□□□ -0.14
SOX3P41225 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC14.19□□□□□ -0.14
SOX3P41225 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC14.19□□□□□ -0.14
SOX3P41225 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC14.19□□□□□ -0.14
SOX3P41225 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
SOX3P41225 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
SOX3P41225 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC14.19□□□□□ -0.14
SOX3P41225 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
SOX3P41225 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
SOX3P41225 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
SOX3P41225 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
SOX3P41225 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SOX3P41225 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
SOX3P41225 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC14.19□□□□□ -0.14
SOX3P41225 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SOX3P41225 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SOX3P41225 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
SOX3P41225 CICP14-201ENST00000629111 2732 ntBASIC14.19□□□□□ -0.14
SOX3P41225 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
SOX3P41225 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SOX3P41225 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SOX3P41225 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SOX3P41225 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SOX3P41225 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
SOX3P41225 TNN-203ENST00000622870 3719 ntTSL 5 BASIC14.18□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 84.9 ms