Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC17.15■□□□□ 0.34
SCN4AP35499 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC17.15■□□□□ 0.34
SCN4AP35499 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC17.15■□□□□ 0.34
SCN4AP35499 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
SCN4AP35499 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC17.15■□□□□ 0.34
SCN4AP35499 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SCN4AP35499 VDAC2-202ENST00000313132 1467 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
SCN4AP35499 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
SCN4AP35499 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
SCN4AP35499 RPS9-202ENST00000391751 510 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
SCN4AP35499 AL080243.1-201ENST00000423293 1060 ntBASIC17.14■□□□□ 0.34
SCN4AP35499 AC068057.1-201ENST00000453322 709 ntTSL 2 BASIC17.14■□□□□ 0.34
SCN4AP35499 CHTF8-207ENST00000520529 475 ntTSL 2 BASIC17.14■□□□□ 0.34
SCN4AP35499 EHF-208ENST00000530286 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
SCN4AP35499 IFI27L1-212ENST00000557218 413 ntTSL 3 BASIC17.14■□□□□ 0.34
SCN4AP35499 AC142086.5-202ENST00000562500 217 ntBASIC17.14■□□□□ 0.34
SCN4AP35499 TNFRSF12A-204ENST00000573001 648 ntTSL 3 BASIC17.14■□□□□ 0.34
SCN4AP35499 SKA2-205ENST00000580541 689 ntTSL 3 BASIC17.14■□□□□ 0.34
SCN4AP35499 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC17.14■□□□□ 0.34
SCN4AP35499 ZNF175-204ENST00000596504 580 ntTSL 2 BASIC17.14■□□□□ 0.34
SCN4AP35499 ADAMTS9-AS1-216ENST00000626280 882 ntTSL 5 BASIC17.14■□□□□ 0.34
SCN4AP35499 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SCN4AP35499 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC17.14■□□□□ 0.33
SCN4AP35499 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SCN4AP35499 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC17.14■□□□□ 0.33
SCN4AP35499 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SCN4AP35499 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
SCN4AP35499 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC17.14■□□□□ 0.33
SCN4AP35499 PCK2-208ENST00000559250 1804 ntTSL 5 BASIC17.14■□□□□ 0.33
SCN4AP35499 FCRL6-202ENST00000339348 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
SCN4AP35499 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC17.14■□□□□ 0.33
SCN4AP35499 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC17.14■□□□□ 0.33
SCN4AP35499 COLQ-202ENST00000383786 1482 ntTSL 5 BASIC17.14■□□□□ 0.33
SCN4AP35499 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SCN4AP35499 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SCN4AP35499 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
SCN4AP35499 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC17.14■□□□□ 0.33
SCN4AP35499 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SCN4AP35499 PGAM2-201ENST00000297283 857 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SCN4AP35499 BX248123.1-201ENST00000429070 606 ntTSL 3 BASIC17.14■□□□□ 0.33
SCN4AP35499 ASS1P2-201ENST00000439895 1223 ntBASIC17.14■□□□□ 0.33
SCN4AP35499 AC027612.2-202ENST00000445955 1199 ntBASIC17.14■□□□□ 0.33
SCN4AP35499 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC17.14■□□□□ 0.33
SCN4AP35499 RN7SL128P-201ENST00000467883 305 ntBASIC17.14■□□□□ 0.33
SCN4AP35499 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC17.14■□□□□ 0.33
SCN4AP35499 HNRNPA1P16-201ENST00000575692 955 ntBASIC17.14■□□□□ 0.33
SCN4AP35499 AL451165.2-201ENST00000606971 718 ntTSL 2 BASIC17.14■□□□□ 0.33
SCN4AP35499 AC080013.5-201ENST00000607044 679 ntBASIC17.14■□□□□ 0.33
SCN4AP35499 GGNBP1-204ENST00000613113 887 ntBASIC17.14■□□□□ 0.33
SCN4AP35499 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SCN4AP35499 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
SCN4AP35499 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC17.14■□□□□ 0.33
SCN4AP35499 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC17.14■□□□□ 0.33
SCN4AP35499 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SCN4AP35499 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC17.14■□□□□ 0.33
SCN4AP35499 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SCN4AP35499 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SCN4AP35499 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SCN4AP35499 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SCN4AP35499 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SCN4AP35499 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SCN4AP35499 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SCN4AP35499 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC17.13■□□□□ 0.33
SCN4AP35499 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC17.13■□□□□ 0.33
SCN4AP35499 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC17.13■□□□□ 0.33
SCN4AP35499 AL365181.1-201ENST00000564032 1828 ntBASIC17.13■□□□□ 0.33
SCN4AP35499 MAD2L1BP-202ENST00000451025 1517 ntTSL 2 BASIC17.13■□□□□ 0.33
SCN4AP35499 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SCN4AP35499 AC104961.1-201ENST00000427605 771 ntBASIC17.13■□□□□ 0.33
SCN4AP35499 AL035413.1-201ENST00000437898 507 ntTSL 2 BASIC17.13■□□□□ 0.33
SCN4AP35499 VENTXP4-201ENST00000449029 958 ntBASIC17.13■□□□□ 0.33
SCN4AP35499 GSS-202ENST00000451957 1092 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SCN4AP35499 CITED1-209ENST00000453707 998 ntAPPRIS ALT2 TSL 3 BASIC17.13■□□□□ 0.33
SCN4AP35499 AC087203.1-201ENST00000532111 1181 ntBASIC17.13■□□□□ 0.33
SCN4AP35499 NR4A1-209ENST00000548232 1101 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SCN4AP35499 CR383656.13-201ENST00000550928 563 ntTSL 3 BASIC17.13■□□□□ 0.33
SCN4AP35499 AL512310.10-201ENST00000555580 563 ntTSL 3 BASIC17.13■□□□□ 0.33
SCN4AP35499 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC17.13■□□□□ 0.33
SCN4AP35499 AC145285.5-201ENST00000562217 361 ntBASIC17.13■□□□□ 0.33
SCN4AP35499 COQ4-204ENST00000608951 781 ntTSL 2 BASIC17.13■□□□□ 0.33
SCN4AP35499 AL359091.4-201ENST00000610052 409 ntBASIC17.13■□□□□ 0.33
SCN4AP35499 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
SCN4AP35499 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
SCN4AP35499 STRN-202ENST00000379213 2254 ntTSL 5 BASIC17.13■□□□□ 0.33
SCN4AP35499 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SCN4AP35499 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
SCN4AP35499 AC117503.4-201ENST00000623229 1418 ntBASIC17.13■□□□□ 0.33
SCN4AP35499 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SCN4AP35499 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SCN4AP35499 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SCN4AP35499 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC17.13■□□□□ 0.33
SCN4AP35499 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC17.12■□□□□ 0.33
SCN4AP35499 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.12■□□□□ 0.33
SCN4AP35499 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SCN4AP35499 PCBD1-201ENST00000299299 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SCN4AP35499 HHLA3-202ENST00000361764 692 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
SCN4AP35499 OR52M2P-201ENST00000414298 959 ntBASIC17.12■□□□□ 0.33
SCN4AP35499 AP000244.1-201ENST00000424582 201 ntBASIC17.12■□□□□ 0.33
SCN4AP35499 AC015795.2-201ENST00000512720 575 ntTSL 3 BASIC17.12■□□□□ 0.33
SCN4AP35499 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms