Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC16.81■□□□□ 0.28
CIITAP33076 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC16.81■□□□□ 0.28
CIITAP33076 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CIITAP33076 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
CIITAP33076 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC16.81■□□□□ 0.28
CIITAP33076 DUX4L46-201ENST00000566845 751 ntBASIC16.81■□□□□ 0.28
CIITAP33076 AC005695.3-201ENST00000614522 232 ntBASIC16.81■□□□□ 0.28
CIITAP33076 PRKN-211ENST00000615065 261 ntTSL 5 BASIC16.81■□□□□ 0.28
CIITAP33076 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CIITAP33076 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CIITAP33076 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CIITAP33076 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CIITAP33076 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CIITAP33076 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CIITAP33076 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CIITAP33076 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
CIITAP33076 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
CIITAP33076 MX1-218ENST00000619682 1980 ntTSL 5 BASIC16.8■□□□□ 0.28
CIITAP33076 AC068587.6-202ENST00000641839 5619 ntBASIC16.8■□□□□ 0.28
CIITAP33076 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC16.8■□□□□ 0.28
CIITAP33076 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CIITAP33076 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC16.8■□□□□ 0.28
CIITAP33076 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CIITAP33076 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CIITAP33076 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC16.8■□□□□ 0.28
CIITAP33076 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CIITAP33076 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
CIITAP33076 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
CIITAP33076 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CIITAP33076 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC16.8■□□□□ 0.28
CIITAP33076 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC16.8■□□□□ 0.28
CIITAP33076 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
CIITAP33076 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC16.8■□□□□ 0.28
CIITAP33076 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC16.8■□□□□ 0.28
CIITAP33076 APOA2-204ENST00000464492 530 ntTSL 3 BASIC16.8■□□□□ 0.28
CIITAP33076 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CIITAP33076 AC108725.1-201ENST00000495472 409 ntBASIC16.8■□□□□ 0.28
CIITAP33076 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC16.8■□□□□ 0.28
CIITAP33076 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC16.8■□□□□ 0.28
CIITAP33076 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC16.8■□□□□ 0.28
CIITAP33076 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC16.8■□□□□ 0.28
CIITAP33076 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CIITAP33076 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC16.8■□□□□ 0.28
CIITAP33076 MIR6869-201ENST00000619434 62 ntBASIC16.8■□□□□ 0.28
CIITAP33076 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC16.8■□□□□ 0.28
CIITAP33076 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CIITAP33076 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC16.8■□□□□ 0.28
CIITAP33076 AL590440.2-201ENST00000641973 1595 ntBASIC16.8■□□□□ 0.28
CIITAP33076 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC16.8■□□□□ 0.28
CIITAP33076 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CIITAP33076 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CIITAP33076 AC023824.1-201ENST00000562945 2975 ntBASIC16.8■□□□□ 0.28
CIITAP33076 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
CIITAP33076 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CIITAP33076 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CIITAP33076 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
CIITAP33076 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC16.79■□□□□ 0.28
CIITAP33076 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CIITAP33076 AL136172.1-201ENST00000598590 1394 ntBASIC16.79■□□□□ 0.28
CIITAP33076 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CIITAP33076 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CIITAP33076 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CIITAP33076 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC16.79■□□□□ 0.28
CIITAP33076 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CIITAP33076 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC16.79■□□□□ 0.28
CIITAP33076 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC16.79■□□□□ 0.28
CIITAP33076 BRWD1P1-201ENST00000401091 371 ntBASIC16.79■□□□□ 0.28
CIITAP33076 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC16.79■□□□□ 0.28
CIITAP33076 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
CIITAP33076 AC103988.2-201ENST00000561804 725 ntBASIC16.79■□□□□ 0.28
CIITAP33076 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC16.79■□□□□ 0.28
CIITAP33076 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC16.79■□□□□ 0.28
CIITAP33076 AC091271.1-201ENST00000611877 1162 ntBASIC16.79■□□□□ 0.28
CIITAP33076 MIR6799-201ENST00000620297 69 ntBASIC16.79■□□□□ 0.28
CIITAP33076 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC16.79■□□□□ 0.28
CIITAP33076 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CIITAP33076 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
CIITAP33076 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CIITAP33076 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
CIITAP33076 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CIITAP33076 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC16.79■□□□□ 0.28
CIITAP33076 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
CIITAP33076 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC16.79■□□□□ 0.28
CIITAP33076 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
CIITAP33076 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
CIITAP33076 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC16.79■□□□□ 0.28
CIITAP33076 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CIITAP33076 DBET-201ENST00000630918 3363 ntBASIC16.78■□□□□ 0.28
CIITAP33076 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
CIITAP33076 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC16.78■□□□□ 0.28
CIITAP33076 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
CIITAP33076 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CIITAP33076 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CIITAP33076 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CIITAP33076 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC16.78■□□□□ 0.28
CIITAP33076 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CIITAP33076 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
CIITAP33076 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CIITAP33076 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CIITAP33076 RPS3-201ENST00000278572 907 ntTSL 3 BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms