Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 AC093899.2-201ENST00000513963 1935 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
SHOX2O60902 HERC5-201ENST00000264350 3513 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
SHOX2O60902 RGL4-202ENST00000401461 2420 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
SHOX2O60902 TESMIN-204ENST00000443940 3495 ntTSL 2 BASIC15.02■□□□□ -0
SHOX2O60902 ATG9B-203ENST00000469530 3489 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
SHOX2O60902 KRT8P35-201ENST00000483942 1338 ntBASIC15.02■□□□□ -0
SHOX2O60902 ABCB7-203ENST00000373394 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02■□□□□ -0
SHOX2O60902 TOLLIP-203ENST00000525159 3429 ntTSL 2 BASIC15.02■□□□□ -0
SHOX2O60902 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
SHOX2O60902 RS1-201ENST00000379984 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
SHOX2O60902 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC15.02■□□□□ -0
SHOX2O60902 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
SHOX2O60902 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
SHOX2O60902 AL133267.1-201ENST00000398220 340 ntBASIC15.02■□□□□ -0
SHOX2O60902 SLC4A1APP2-201ENST00000424054 1259 ntBASIC15.02■□□□□ -0
SHOX2O60902 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC15.02■□□□□ -0
SHOX2O60902 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
SHOX2O60902 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC15.02■□□□□ -0
SHOX2O60902 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC15.02■□□□□ -0
SHOX2O60902 AL691432.3-201ENST00000621860 400 ntBASIC15.02■□□□□ -0
SHOX2O60902 FTO-214ENST00000636218 2227 ntTSL 5 BASIC15.02□□□□□ -0.01
SHOX2O60902 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC15.02□□□□□ -0.01
SHOX2O60902 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
SHOX2O60902 ZSCAN16-AS1-201ENST00000600652 2163 ntTSL 2 BASIC15.02□□□□□ -0.01
SHOX2O60902 PES1-204ENST00000402284 2144 ntTSL 5 BASIC15.02□□□□□ -0.01
SHOX2O60902 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
SHOX2O60902 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
SHOX2O60902 CD276-202ENST00000318443 3469 ntAPPRIS P2 TSL 2 BASIC15.02□□□□□ -0.01
SHOX2O60902 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
SHOX2O60902 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
SHOX2O60902 KIZ-213ENST00000620891 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
SHOX2O60902 MSH2-201ENST00000233146 3307 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SHOX2O60902 OR2V1-204ENST00000641551 2423 ntAPPRIS P1 BASIC15.02□□□□□ -0.01
SHOX2O60902 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SHOX2O60902 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SHOX2O60902 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
SHOX2O60902 H3F3B-201ENST00000254810 2705 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SHOX2O60902 KIAA1191-202ENST00000393725 2700 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SHOX2O60902 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC15.01□□□□□ -0.01
SHOX2O60902 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
SHOX2O60902 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SHOX2O60902 KCNIP1-208ENST00000520740 1845 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SHOX2O60902 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SHOX2O60902 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
SHOX2O60902 TCTN2-202ENST00000426174 2513 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
SHOX2O60902 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SHOX2O60902 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC15.01□□□□□ -0.01
SHOX2O60902 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SHOX2O60902 GRIN1-207ENST00000371560 3640 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SHOX2O60902 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SHOX2O60902 OSBP2-219ENST00000535268 3248 ntTSL 2 BASIC15.01□□□□□ -0.01
SHOX2O60902 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SHOX2O60902 TVP23C-CDRT4-203ENST00000522212 2833 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
SHOX2O60902 MAP2K3-203ENST00000361818 2034 ntTSL 5 BASIC15.01□□□□□ -0.01
SHOX2O60902 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
SHOX2O60902 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SHOX2O60902 RPS2P28-201ENST00000314255 741 ntBASIC15.01□□□□□ -0.01
SHOX2O60902 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC15.01□□□□□ -0.01
SHOX2O60902 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC15.01□□□□□ -0.01
SHOX2O60902 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC15.01□□□□□ -0.01
SHOX2O60902 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
SHOX2O60902 NINL-203ENST00000422516 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
SHOX2O60902 AC098831.1-202ENST00000438821 336 ntBASIC15.01□□□□□ -0.01
SHOX2O60902 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC15.01□□□□□ -0.01
SHOX2O60902 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC15.01□□□□□ -0.01
SHOX2O60902 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
SHOX2O60902 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC15.01□□□□□ -0.01
SHOX2O60902 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC15.01□□□□□ -0.01
SHOX2O60902 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC15.01□□□□□ -0.01
SHOX2O60902 AC026979.3-201ENST00000607315 403 ntBASIC15.01□□□□□ -0.01
SHOX2O60902 MIR7706-201ENST00000613747 67 ntBASIC15.01□□□□□ -0.01
SHOX2O60902 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
SHOX2O60902 NADK-202ENST00000341991 3098 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
SHOX2O60902 ISY1-RAB43-201ENST00000418265 4868 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
SHOX2O60902 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC15.01□□□□□ -0.01
SHOX2O60902 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC15.01□□□□□ -0.01
SHOX2O60902 LILRA1-201ENST00000251372 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SHOX2O60902 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SHOX2O60902 TRHDE-AS1-201ENST00000426250 3684 ntTSL 5 BASIC15.01□□□□□ -0.01
SHOX2O60902 CDC20B-203ENST00000381375 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SHOX2O60902 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SHOX2O60902 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SHOX2O60902 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC15.01□□□□□ -0.01
SHOX2O60902 TMEM173-201ENST00000330794 1771 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SHOX2O60902 ROPN1B-202ENST00000504401 2050 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SHOX2O60902 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC15□□□□□ -0.01
SHOX2O60902 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SHOX2O60902 PRR26-202ENST00000441152 2251 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
SHOX2O60902 ADGRA1-201ENST00000392606 3438 ntTSL 1 (best) BASIC15□□□□□ -0.01
SHOX2O60902 TMEM41A-203ENST00000421852 2827 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SHOX2O60902 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
SHOX2O60902 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC15□□□□□ -0.01
SHOX2O60902 ZNF821-214ENST00000565601 1858 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
SHOX2O60902 IL11RA-208ENST00000555003 3008 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
SHOX2O60902 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC15□□□□□ -0.01
SHOX2O60902 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SHOX2O60902 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
SHOX2O60902 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
SHOX2O60902 CMC4-201ENST00000369479 864 ntAPPRIS P1 TSL 3 BASIC15□□□□□ -0.01
SHOX2O60902 CSF3-203ENST00000394148 622 ntTSL 3 BASIC15□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms