Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
MSH4O15457 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.75■□□□□ 0.27
MSH4O15457 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
MSH4O15457 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC16.75■□□□□ 0.27
MSH4O15457 AL354877.1-201ENST00000424412 413 ntBASIC16.75■□□□□ 0.27
MSH4O15457 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
MSH4O15457 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC16.75■□□□□ 0.27
MSH4O15457 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC16.75■□□□□ 0.27
MSH4O15457 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC16.75■□□□□ 0.27
MSH4O15457 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC16.75■□□□□ 0.27
MSH4O15457 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC16.75■□□□□ 0.27
MSH4O15457 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC16.75■□□□□ 0.27
MSH4O15457 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC16.75■□□□□ 0.27
MSH4O15457 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
MSH4O15457 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC16.75■□□□□ 0.27
MSH4O15457 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
MSH4O15457 MIR6869-201ENST00000619434 62 ntBASIC16.75■□□□□ 0.27
MSH4O15457 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
MSH4O15457 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
MSH4O15457 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
MSH4O15457 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
MSH4O15457 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
MSH4O15457 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC16.75■□□□□ 0.27
MSH4O15457 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
MSH4O15457 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
MSH4O15457 AC092135.3-201ENST00000624151 1846 ntBASIC16.75■□□□□ 0.27
MSH4O15457 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC16.75■□□□□ 0.27
MSH4O15457 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
MSH4O15457 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC16.75■□□□□ 0.27
MSH4O15457 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
MSH4O15457 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
MSH4O15457 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
MSH4O15457 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSH4O15457 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC16.74■□□□□ 0.27
MSH4O15457 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC16.74■□□□□ 0.27
MSH4O15457 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSH4O15457 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC16.74■□□□□ 0.27
MSH4O15457 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSH4O15457 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSH4O15457 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
MSH4O15457 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSH4O15457 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC16.74■□□□□ 0.27
MSH4O15457 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC16.74■□□□□ 0.27
MSH4O15457 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC16.74■□□□□ 0.27
MSH4O15457 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSH4O15457 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC16.74■□□□□ 0.27
MSH4O15457 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSH4O15457 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSH4O15457 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
MSH4O15457 PUDPP3-201ENST00000445368 636 ntBASIC16.74■□□□□ 0.27
MSH4O15457 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC16.74■□□□□ 0.27
MSH4O15457 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
MSH4O15457 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC16.74■□□□□ 0.27
MSH4O15457 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC16.74■□□□□ 0.27
MSH4O15457 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC16.74■□□□□ 0.27
MSH4O15457 AC104982.3-201ENST00000581995 514 ntBASIC16.74■□□□□ 0.27
MSH4O15457 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC16.74■□□□□ 0.27
MSH4O15457 AC009955.4-201ENST00000597192 544 ntBASIC16.74■□□□□ 0.27
MSH4O15457 AC008825.2-201ENST00000603374 718 ntBASIC16.74■□□□□ 0.27
MSH4O15457 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
MSH4O15457 AC068587.6-202ENST00000641839 5619 ntBASIC16.74■□□□□ 0.27
MSH4O15457 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSH4O15457 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSH4O15457 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSH4O15457 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
MSH4O15457 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
MSH4O15457 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSH4O15457 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSH4O15457 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
MSH4O15457 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSH4O15457 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
MSH4O15457 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSH4O15457 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
MSH4O15457 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
MSH4O15457 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
MSH4O15457 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
MSH4O15457 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
MSH4O15457 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
MSH4O15457 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
MSH4O15457 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
MSH4O15457 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
MSH4O15457 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC16.73■□□□□ 0.27
MSH4O15457 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC16.73■□□□□ 0.27
MSH4O15457 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
MSH4O15457 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
MSH4O15457 AK6-201ENST00000380818 1183 ntTSL 2 BASIC16.73■□□□□ 0.27
MSH4O15457 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC16.73■□□□□ 0.27
MSH4O15457 PACS1-203ENST00000524815 628 ntTSL 4 BASIC16.73■□□□□ 0.27
MSH4O15457 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC16.73■□□□□ 0.27
MSH4O15457 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC16.73■□□□□ 0.27
MSH4O15457 AC005730.2-201ENST00000564549 1184 ntBASIC16.73■□□□□ 0.27
MSH4O15457 DUX4L46-201ENST00000566845 751 ntBASIC16.73■□□□□ 0.27
MSH4O15457 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
MSH4O15457 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC16.73■□□□□ 0.27
MSH4O15457 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC16.73■□□□□ 0.27
MSH4O15457 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC16.73■□□□□ 0.27
MSH4O15457 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC16.73■□□□□ 0.27
MSH4O15457 KLK11-210ENST00000600362 759 ntTSL 3 BASIC16.73■□□□□ 0.27
MSH4O15457 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
MSH4O15457 AC018735.1-201ENST00000437208 1502 ntBASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 63.9 ms