Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
UPK1AO00322 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC14.24□□□□□ -0.13
UPK1AO00322 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC14.24□□□□□ -0.13
UPK1AO00322 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
UPK1AO00322 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
UPK1AO00322 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
UPK1AO00322 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
UPK1AO00322 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
UPK1AO00322 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
UPK1AO00322 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
UPK1AO00322 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
UPK1AO00322 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
UPK1AO00322 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
UPK1AO00322 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
UPK1AO00322 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
UPK1AO00322 SOCS2P1-201ENST00000417727 557 ntBASIC14.24□□□□□ -0.13
UPK1AO00322 NUS1P3-201ENST00000423502 862 ntBASIC14.24□□□□□ -0.13
UPK1AO00322 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC14.24□□□□□ -0.13
UPK1AO00322 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC14.24□□□□□ -0.13
UPK1AO00322 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC14.24□□□□□ -0.13
UPK1AO00322 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC14.24□□□□□ -0.13
UPK1AO00322 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC14.24□□□□□ -0.13
UPK1AO00322 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC14.24□□□□□ -0.13
UPK1AO00322 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC14.24□□□□□ -0.13
UPK1AO00322 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC14.24□□□□□ -0.13
UPK1AO00322 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC14.24□□□□□ -0.13
UPK1AO00322 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC14.24□□□□□ -0.13
UPK1AO00322 PRSS30P-206ENST00000641773 873 ntBASIC14.24□□□□□ -0.13
UPK1AO00322 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC14.24□□□□□ -0.13
UPK1AO00322 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
UPK1AO00322 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
UPK1AO00322 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
UPK1AO00322 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
UPK1AO00322 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
UPK1AO00322 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
UPK1AO00322 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
UPK1AO00322 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
UPK1AO00322 AC105206.1-202ENST00000314927 2368 ntBASIC14.24□□□□□ -0.13
UPK1AO00322 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC14.24□□□□□ -0.13
UPK1AO00322 AGER-206ENST00000375070 1463 ntTSL 5 BASIC14.24□□□□□ -0.13
UPK1AO00322 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
UPK1AO00322 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
UPK1AO00322 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
UPK1AO00322 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC14.24□□□□□ -0.13
UPK1AO00322 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
UPK1AO00322 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
UPK1AO00322 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
UPK1AO00322 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
UPK1AO00322 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
UPK1AO00322 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC14.23□□□□□ -0.13
UPK1AO00322 HNRNPA1P48-201ENST00000562726 1377 ntBASIC14.23□□□□□ -0.13
UPK1AO00322 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
UPK1AO00322 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
UPK1AO00322 AL137783.1-201ENST00000623494 1896 ntBASIC14.23□□□□□ -0.13
UPK1AO00322 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC14.23□□□□□ -0.13
UPK1AO00322 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
UPK1AO00322 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
UPK1AO00322 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC14.23□□□□□ -0.13
UPK1AO00322 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
UPK1AO00322 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
UPK1AO00322 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
UPK1AO00322 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
UPK1AO00322 NSL1-201ENST00000366976 722 ntTSL 2 BASIC14.23□□□□□ -0.13
UPK1AO00322 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
UPK1AO00322 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC14.23□□□□□ -0.13
UPK1AO00322 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC14.23□□□□□ -0.13
UPK1AO00322 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC14.23□□□□□ -0.13
UPK1AO00322 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC14.23□□□□□ -0.13
UPK1AO00322 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC14.23□□□□□ -0.13
UPK1AO00322 TERF1P3-201ENST00000505638 1227 ntBASIC14.23□□□□□ -0.13
UPK1AO00322 GLI4-203ENST00000517468 963 ntTSL 5 BASIC14.23□□□□□ -0.13
UPK1AO00322 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
UPK1AO00322 AC190387.1-201ENST00000551683 408 ntBASIC14.23□□□□□ -0.13
UPK1AO00322 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC14.23□□□□□ -0.13
UPK1AO00322 CTBP2P3-201ENST00000585629 1255 ntBASIC14.23□□□□□ -0.13
UPK1AO00322 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC14.23□□□□□ -0.13
UPK1AO00322 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC14.23□□□□□ -0.13
UPK1AO00322 AC133539.2-201ENST00000604757 467 ntBASIC14.23□□□□□ -0.13
UPK1AO00322 AC008494.3-201ENST00000606615 944 ntBASIC14.23□□□□□ -0.13
UPK1AO00322 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
UPK1AO00322 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
UPK1AO00322 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC14.23□□□□□ -0.13
UPK1AO00322 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
UPK1AO00322 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
UPK1AO00322 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
UPK1AO00322 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
UPK1AO00322 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC14.23□□□□□ -0.13
UPK1AO00322 MX1-218ENST00000619682 1980 ntTSL 5 BASIC14.23□□□□□ -0.13
UPK1AO00322 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC14.23□□□□□ -0.13
UPK1AO00322 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
UPK1AO00322 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
UPK1AO00322 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
UPK1AO00322 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
UPK1AO00322 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
UPK1AO00322 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
UPK1AO00322 AL359183.1-201ENST00000623796 2132 ntBASIC14.23□□□□□ -0.13
UPK1AO00322 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
UPK1AO00322 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC14.23□□□□□ -0.13
UPK1AO00322 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
UPK1AO00322 TNN-203ENST00000622870 3719 ntTSL 5 BASIC14.23□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms