Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
CCDC188H7C350 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC15.63■□□□□ 0.09
CCDC188H7C350 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC15.63■□□□□ 0.09
CCDC188H7C350 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC15.63■□□□□ 0.09
CCDC188H7C350 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC188H7C350 POLD2P1-201ENST00000511220 997 ntBASIC15.63■□□□□ 0.09
CCDC188H7C350 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC15.63■□□□□ 0.09
CCDC188H7C350 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC15.63■□□□□ 0.09
CCDC188H7C350 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC15.63■□□□□ 0.09
CCDC188H7C350 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC15.63■□□□□ 0.09
CCDC188H7C350 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC15.63■□□□□ 0.09
CCDC188H7C350 AC092364.2-202ENST00000597012 1073 ntBASIC15.63■□□□□ 0.09
CCDC188H7C350 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
CCDC188H7C350 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC15.63■□□□□ 0.09
CCDC188H7C350 WARS-203ENST00000358655 2466 ntTSL 2 BASIC15.63■□□□□ 0.09
CCDC188H7C350 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC188H7C350 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC188H7C350 AC012617.1-204ENST00000586340 2305 ntBASIC15.63■□□□□ 0.09
CCDC188H7C350 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC188H7C350 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC15.63■□□□□ 0.09
CCDC188H7C350 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC188H7C350 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC15.63■□□□□ 0.09
CCDC188H7C350 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC188H7C350 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
CCDC188H7C350 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC188H7C350 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC188H7C350 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC188H7C350 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
CCDC188H7C350 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC188H7C350 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC188H7C350 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC15.62■□□□□ 0.09
CCDC188H7C350 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC15.62■□□□□ 0.09
CCDC188H7C350 RERG-209ENST00000546331 1383 ntTSL 2 BASIC15.62■□□□□ 0.09
CCDC188H7C350 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC188H7C350 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC188H7C350 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC188H7C350 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC188H7C350 RN7SL832P-201ENST00000607781 1756 ntBASIC15.62■□□□□ 0.09
CCDC188H7C350 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC188H7C350 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC188H7C350 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC188H7C350 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC15.62■□□□□ 0.09
CCDC188H7C350 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC15.62■□□□□ 0.09
CCDC188H7C350 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC15.62■□□□□ 0.09
CCDC188H7C350 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC15.62■□□□□ 0.09
CCDC188H7C350 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC188H7C350 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC188H7C350 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC188H7C350 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC15.62■□□□□ 0.09
CCDC188H7C350 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC188H7C350 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC188H7C350 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC188H7C350 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC188H7C350 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC188H7C350 MIR574-201ENST00000385209 96 ntBASIC15.62■□□□□ 0.09
CCDC188H7C350 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC15.62■□□□□ 0.09
CCDC188H7C350 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC15.62■□□□□ 0.09
CCDC188H7C350 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC188H7C350 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC15.62■□□□□ 0.09
CCDC188H7C350 TIMM17BP1-201ENST00000545713 516 ntBASIC15.62■□□□□ 0.09
CCDC188H7C350 AC092337.1-201ENST00000568699 1129 ntBASIC15.62■□□□□ 0.09
CCDC188H7C350 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC188H7C350 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC15.62■□□□□ 0.09
CCDC188H7C350 5S_rRNA.22-201ENST00000614916 106 ntBASIC15.62■□□□□ 0.09
CCDC188H7C350 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC15.62■□□□□ 0.09
CCDC188H7C350 SPDYE12P-201ENST00000618416 771 ntBASIC15.62■□□□□ 0.09
CCDC188H7C350 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC188H7C350 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC15.62■□□□□ 0.09
CCDC188H7C350 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC188H7C350 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC15.62■□□□□ 0.09
CCDC188H7C350 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC188H7C350 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
CCDC188H7C350 LSS-211ENST00000522411 2523 ntTSL 2 BASIC15.62■□□□□ 0.09
CCDC188H7C350 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC188H7C350 MYADML-201ENST00000474610 2147 ntBASIC15.62■□□□□ 0.09
CCDC188H7C350 AL359183.1-201ENST00000623796 2132 ntBASIC15.62■□□□□ 0.09
CCDC188H7C350 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC188H7C350 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC15.62■□□□□ 0.09
CCDC188H7C350 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC188H7C350 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC15.62■□□□□ 0.09
CCDC188H7C350 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC188H7C350 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC188H7C350 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC188H7C350 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC188H7C350 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC15.61■□□□□ 0.09
CCDC188H7C350 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
CCDC188H7C350 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC188H7C350 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC15.61■□□□□ 0.09
CCDC188H7C350 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC15.61■□□□□ 0.09
CCDC188H7C350 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
CCDC188H7C350 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
CCDC188H7C350 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC15.61■□□□□ 0.09
CCDC188H7C350 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC188H7C350 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC188H7C350 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC188H7C350 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC188H7C350 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC188H7C350 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC188H7C350 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC15.61■□□□□ 0.09
CCDC188H7C350 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms