Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 AC138761.1-201ENST00000584393 385 ntBASIC12.19□□□□□ -0.46
FOXA2Q9Y261 GPX4-206ENST00000588919 803 ntTSL 2 BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 AL049840.4-201ENST00000602422 811 ntBASIC12.19□□□□□ -0.46
FOXA2Q9Y261 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 AC007431.3-201ENST00000623221 587 ntBASIC12.19□□□□□ -0.46
FOXA2Q9Y261 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 AC027601.5-201ENST00000624065 2482 ntBASIC12.18□□□□□ -0.46
FOXA2Q9Y261 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 AC136759.1-202ENST00000530858 2194 ntBASIC12.18□□□□□ -0.46
FOXA2Q9Y261 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 AL645937.2-201ENST00000396808 931 ntBASIC12.18□□□□□ -0.46
FOXA2Q9Y261 MYCLP2-201ENST00000449268 967 ntBASIC12.18□□□□□ -0.46
FOXA2Q9Y261 CRB3P1-201ENST00000449338 276 ntBASIC12.18□□□□□ -0.46
FOXA2Q9Y261 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 API5-211ENST00000534695 560 ntTSL 5 BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 AL157414.3-201ENST00000624276 1954 ntBASIC12.18□□□□□ -0.46
FOXA2Q9Y261 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms