Protein–RNA interactions for Protein: Q99758

ABCA3, ATP-binding cassette sub-family A member 3, humanhuman

Predictions only

Length 1,704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3Q99758 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ABCA3Q99758 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ABCA3Q99758 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC19.22■□□□□ 0.67
ABCA3Q99758 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
ABCA3Q99758 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC19.22■□□□□ 0.67
ABCA3Q99758 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC19.22■□□□□ 0.67
ABCA3Q99758 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC19.22■□□□□ 0.67
ABCA3Q99758 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ABCA3Q99758 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ABCA3Q99758 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC19.22■□□□□ 0.67
ABCA3Q99758 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC19.22■□□□□ 0.67
ABCA3Q99758 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC19.22■□□□□ 0.67
ABCA3Q99758 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ABCA3Q99758 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
ABCA3Q99758 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ABCA3Q99758 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ABCA3Q99758 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
ABCA3Q99758 COLEC11-204ENST00000402794 1134 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
ABCA3Q99758 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC19.22■□□□□ 0.67
ABCA3Q99758 EXTL3-AS1-203ENST00000520023 780 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
ABCA3Q99758 AP003031.2-205ENST00000531263 683 ntTSL 2 BASIC19.22■□□□□ 0.67
ABCA3Q99758 AC145422.1-201ENST00000541574 544 ntTSL 3 BASIC19.22■□□□□ 0.67
ABCA3Q99758 TNFSF13B-206ENST00000542136 495 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
ABCA3Q99758 AC018846.1-201ENST00000568231 183 ntBASIC19.22■□□□□ 0.67
ABCA3Q99758 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
ABCA3Q99758 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
ABCA3Q99758 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ABCA3Q99758 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
ABCA3Q99758 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC19.21■□□□□ 0.67
ABCA3Q99758 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
ABCA3Q99758 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
ABCA3Q99758 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
ABCA3Q99758 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
ABCA3Q99758 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC19.21■□□□□ 0.67
ABCA3Q99758 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
ABCA3Q99758 KRT8P18-201ENST00000413425 1445 ntBASIC19.21■□□□□ 0.67
ABCA3Q99758 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC19.21■□□□□ 0.67
ABCA3Q99758 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC19.21■□□□□ 0.67
ABCA3Q99758 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC19.21■□□□□ 0.67
ABCA3Q99758 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
ABCA3Q99758 BAX-205ENST00000391871 687 ntTSL 5 BASIC19.21■□□□□ 0.67
ABCA3Q99758 AP000354.1-201ENST00000396982 456 ntBASIC19.21■□□□□ 0.67
ABCA3Q99758 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
ABCA3Q99758 AC136604.1-202ENST00000425471 771 ntBASIC19.21■□□□□ 0.67
ABCA3Q99758 LINC01278-201ENST00000433061 529 ntTSL 3 BASIC19.21■□□□□ 0.67
ABCA3Q99758 SOD2-205ENST00000444946 917 ntTSL 2 BASIC19.21■□□□□ 0.67
ABCA3Q99758 STK24P1-201ENST00000455035 1291 ntBASIC19.21■□□□□ 0.67
ABCA3Q99758 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC19.21■□□□□ 0.67
ABCA3Q99758 LINC01278-206ENST00000610088 554 ntTSL 4 BASIC19.21■□□□□ 0.67
ABCA3Q99758 IDH3A-224ENST00000629769 114 ntTSL 5 BASIC19.21■□□□□ 0.67
ABCA3Q99758 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC19.21■□□□□ 0.67
ABCA3Q99758 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
ABCA3Q99758 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
ABCA3Q99758 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC19.21■□□□□ 0.67
ABCA3Q99758 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC19.21■□□□□ 0.67
ABCA3Q99758 FAM227B-212ENST00000561064 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
ABCA3Q99758 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC19.21■□□□□ 0.67
ABCA3Q99758 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC19.21■□□□□ 0.67
ABCA3Q99758 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ABCA3Q99758 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC19.21■□□□□ 0.66
ABCA3Q99758 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC19.2■□□□□ 0.66
ABCA3Q99758 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
ABCA3Q99758 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ABCA3Q99758 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ABCA3Q99758 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
ABCA3Q99758 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ABCA3Q99758 SAT1-201ENST00000379251 801 ntTSL 2 BASIC19.2■□□□□ 0.66
ABCA3Q99758 SAT1-202ENST00000379253 909 ntTSL 2 BASIC19.2■□□□□ 0.66
ABCA3Q99758 SAT1-203ENST00000379254 868 ntTSL 3 BASIC19.2■□□□□ 0.66
ABCA3Q99758 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ABCA3Q99758 AL121983.2-202ENST00000419983 535 ntTSL 3 BASIC19.2■□□□□ 0.66
ABCA3Q99758 IFNWP2-201ENST00000431203 580 ntBASIC19.2■□□□□ 0.66
ABCA3Q99758 AL157392.3-204ENST00000440878 397 ntTSL 3 BASIC19.2■□□□□ 0.66
ABCA3Q99758 AC004540.1-204ENST00000449537 727 ntTSL 2 BASIC19.2■□□□□ 0.66
ABCA3Q99758 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC19.2■□□□□ 0.66
ABCA3Q99758 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC19.2■□□□□ 0.66
ABCA3Q99758 MAX-218ENST00000557746 571 ntTSL 4 BASIC19.2■□□□□ 0.66
ABCA3Q99758 AC129778.1-201ENST00000623957 920 ntTSL 5 BASIC19.2■□□□□ 0.66
ABCA3Q99758 AC026336.4-201ENST00000624565 1050 ntBASIC19.2■□□□□ 0.66
ABCA3Q99758 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ABCA3Q99758 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC19.2■□□□□ 0.66
ABCA3Q99758 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ABCA3Q99758 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ABCA3Q99758 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ABCA3Q99758 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ABCA3Q99758 WIPI1-201ENST00000262139 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ABCA3Q99758 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC19.2■□□□□ 0.66
ABCA3Q99758 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC19.2■□□□□ 0.66
ABCA3Q99758 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ABCA3Q99758 NIFK-AS1-203ENST00000419902 1316 ntTSL 2 BASIC19.2■□□□□ 0.66
ABCA3Q99758 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
ABCA3Q99758 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ABCA3Q99758 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
ABCA3Q99758 CTSL-202ENST00000342020 933 ntTSL 2 BASIC19.2■□□□□ 0.66
ABCA3Q99758 AC073210.1-201ENST00000414799 232 ntBASIC19.2■□□□□ 0.66
ABCA3Q99758 AC016266.1-201ENST00000557558 729 ntTSL 3 BASIC19.2■□□□□ 0.66
ABCA3Q99758 RBFOX3-206ENST00000582043 1143 ntTSL 5 BASIC19.2■□□□□ 0.66
ABCA3Q99758 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ABCA3Q99758 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
ABCA3Q99758 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 69.6 ms