Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC15.26■□□□□ 0.03
SHROOM3Q8TF72 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC15.26■□□□□ 0.03
SHROOM3Q8TF72 CTBP2P5-201ENST00000454986 1264 ntBASIC15.26■□□□□ 0.03
SHROOM3Q8TF72 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC15.26■□□□□ 0.03
SHROOM3Q8TF72 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC15.26■□□□□ 0.03
SHROOM3Q8TF72 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC15.26■□□□□ 0.03
SHROOM3Q8TF72 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC15.26■□□□□ 0.03
SHROOM3Q8TF72 MIR4683-201ENST00000579659 81 ntBASIC15.26■□□□□ 0.03
SHROOM3Q8TF72 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC15.26■□□□□ 0.03
SHROOM3Q8TF72 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC15.26■□□□□ 0.03
SHROOM3Q8TF72 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
SHROOM3Q8TF72 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SHROOM3Q8TF72 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC15.26■□□□□ 0.03
SHROOM3Q8TF72 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SHROOM3Q8TF72 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
SHROOM3Q8TF72 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC15.26■□□□□ 0.03
SHROOM3Q8TF72 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SHROOM3Q8TF72 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
SHROOM3Q8TF72 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC15.26■□□□□ 0.03
SHROOM3Q8TF72 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SHROOM3Q8TF72 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
SHROOM3Q8TF72 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SHROOM3Q8TF72 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 MPV17-206ENST00000402722 827 ntTSL 3 BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 C2orf27AP3-201ENST00000434123 579 ntBASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 ALG3P1-201ENST00000508806 1114 ntBASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 LARP4-220ENST00000615080 856 ntTSL 5 BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 AL354718.3-201ENST00000616414 581 ntBASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 AC020910.5-201ENST00000623668 1865 ntBASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 CR382287.1-201ENST00000623954 586 ntBASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 AL590440.2-201ENST00000641973 1595 ntBASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 AC007191.1-201ENST00000623179 2995 ntBASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 AHRR-211ENST00000515206 462 ntTSL 5 BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 RPL8-205ENST00000527914 551 ntTSL 3 BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 AL513477.1-201ENST00000602865 2407 ntBASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC15.25■□□□□ 0.03
SHROOM3Q8TF72 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 AC007292.2-201ENST00000593524 1812 ntBASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms