Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC13.37□□□□□ -0.27
SKA3Q8IX90 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SKA3Q8IX90 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SKA3Q8IX90 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SKA3Q8IX90 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SKA3Q8IX90 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SKA3Q8IX90 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
SKA3Q8IX90 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC13.37□□□□□ -0.27
SKA3Q8IX90 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SKA3Q8IX90 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC13.37□□□□□ -0.27
SKA3Q8IX90 RNU1-114P-201ENST00000365297 166 ntBASIC13.37□□□□□ -0.27
SKA3Q8IX90 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
SKA3Q8IX90 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC13.37□□□□□ -0.27
SKA3Q8IX90 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC13.37□□□□□ -0.27
SKA3Q8IX90 AC114812.1-204ENST00000449669 728 ntBASIC13.37□□□□□ -0.27
SKA3Q8IX90 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC13.37□□□□□ -0.27
SKA3Q8IX90 COX20P2-201ENST00000452636 358 ntBASIC13.37□□□□□ -0.27
SKA3Q8IX90 AC093433.1-201ENST00000458048 571 ntBASIC13.37□□□□□ -0.27
SKA3Q8IX90 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC13.37□□□□□ -0.27
SKA3Q8IX90 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
SKA3Q8IX90 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC13.37□□□□□ -0.27
SKA3Q8IX90 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SKA3Q8IX90 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC13.37□□□□□ -0.27
SKA3Q8IX90 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
SKA3Q8IX90 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC13.37□□□□□ -0.27
SKA3Q8IX90 LINC02084-201ENST00000606069 1096 ntBASIC13.37□□□□□ -0.27
SKA3Q8IX90 SRP9-204ENST00000619790 377 ntTSL 2 BASIC13.37□□□□□ -0.27
SKA3Q8IX90 AL358472.5-202ENST00000641448 1267 ntBASIC13.37□□□□□ -0.27
SKA3Q8IX90 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC13.37□□□□□ -0.27
SKA3Q8IX90 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SKA3Q8IX90 MARS-233ENST00000628866 2583 ntTSL 5 BASIC13.37□□□□□ -0.27
SKA3Q8IX90 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC13.37□□□□□ -0.27
SKA3Q8IX90 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SKA3Q8IX90 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SKA3Q8IX90 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC13.37□□□□□ -0.27
SKA3Q8IX90 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SKA3Q8IX90 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SKA3Q8IX90 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC13.37□□□□□ -0.27
SKA3Q8IX90 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
SKA3Q8IX90 CR383656.2-201ENST00000548656 2254 ntBASIC13.37□□□□□ -0.27
SKA3Q8IX90 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SKA3Q8IX90 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SKA3Q8IX90 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SKA3Q8IX90 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
SKA3Q8IX90 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SKA3Q8IX90 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
SKA3Q8IX90 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SKA3Q8IX90 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC13.36□□□□□ -0.27
SKA3Q8IX90 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SKA3Q8IX90 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
SKA3Q8IX90 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SKA3Q8IX90 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
SKA3Q8IX90 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SKA3Q8IX90 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
SKA3Q8IX90 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
SKA3Q8IX90 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC13.36□□□□□ -0.27
SKA3Q8IX90 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC13.36□□□□□ -0.27
SKA3Q8IX90 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
SKA3Q8IX90 LILRP1-201ENST00000444199 1370 ntBASIC13.36□□□□□ -0.27
SKA3Q8IX90 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC13.36□□□□□ -0.27
SKA3Q8IX90 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
SKA3Q8IX90 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC13.36□□□□□ -0.27
SKA3Q8IX90 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC13.36□□□□□ -0.27
SKA3Q8IX90 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC13.36□□□□□ -0.27
SKA3Q8IX90 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
SKA3Q8IX90 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SKA3Q8IX90 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC13.36□□□□□ -0.27
SKA3Q8IX90 ACKR1-201ENST00000368121 1240 ntBASIC13.36□□□□□ -0.27
SKA3Q8IX90 APOA1-205ENST00000375329 927 ntTSL 2 BASIC13.36□□□□□ -0.27
SKA3Q8IX90 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
SKA3Q8IX90 AL139094.1-201ENST00000405549 1188 ntBASIC13.36□□□□□ -0.27
SKA3Q8IX90 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
SKA3Q8IX90 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC13.36□□□□□ -0.27
SKA3Q8IX90 AC011495.1-201ENST00000498085 584 ntBASIC13.36□□□□□ -0.27
SKA3Q8IX90 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC13.36□□□□□ -0.27
SKA3Q8IX90 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
SKA3Q8IX90 POLE2-203ENST00000553805 496 ntTSL 2 BASIC13.36□□□□□ -0.27
SKA3Q8IX90 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC13.36□□□□□ -0.27
SKA3Q8IX90 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC13.36□□□□□ -0.27
SKA3Q8IX90 KSR1-207ENST00000578981 748 ntTSL 4 BASIC13.36□□□□□ -0.27
SKA3Q8IX90 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC13.36□□□□□ -0.27
SKA3Q8IX90 AC010319.3-201ENST00000597028 470 ntBASIC13.36□□□□□ -0.27
SKA3Q8IX90 ATF5-205ENST00000600336 682 ntTSL 2 BASIC13.36□□□□□ -0.27
SKA3Q8IX90 AP005019.2-201ENST00000615104 511 ntBASIC13.36□□□□□ -0.27
SKA3Q8IX90 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
SKA3Q8IX90 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC13.36□□□□□ -0.27
SKA3Q8IX90 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
SKA3Q8IX90 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
SKA3Q8IX90 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
SKA3Q8IX90 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
SKA3Q8IX90 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SKA3Q8IX90 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SKA3Q8IX90 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
SKA3Q8IX90 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
SKA3Q8IX90 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
SKA3Q8IX90 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
SKA3Q8IX90 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC13.36□□□□□ -0.27
SKA3Q8IX90 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
SKA3Q8IX90 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SKA3Q8IX90 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms