Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
CX3CL1P78423 AC133539.2-201ENST00000604757 467 ntBASIC12.18□□□□□ -0.46
CX3CL1P78423 AC008494.3-201ENST00000606615 944 ntBASIC12.18□□□□□ -0.46
CX3CL1P78423 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC12.18□□□□□ -0.46
CX3CL1P78423 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC12.18□□□□□ -0.46
CX3CL1P78423 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC12.18□□□□□ -0.46
CX3CL1P78423 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC12.18□□□□□ -0.46
CX3CL1P78423 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
CX3CL1P78423 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC12.18□□□□□ -0.46
CX3CL1P78423 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
CX3CL1P78423 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC12.18□□□□□ -0.46
CX3CL1P78423 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC12.18□□□□□ -0.46
CX3CL1P78423 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC12.18□□□□□ -0.46
CX3CL1P78423 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CX3CL1P78423 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CX3CL1P78423 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CX3CL1P78423 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CX3CL1P78423 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
CX3CL1P78423 AC006504.5-208ENST00000588784 2401 ntBASIC12.18□□□□□ -0.46
CX3CL1P78423 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CX3CL1P78423 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CX3CL1P78423 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CX3CL1P78423 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
CX3CL1P78423 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CX3CL1P78423 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CX3CL1P78423 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
CX3CL1P78423 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
CX3CL1P78423 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC12.17□□□□□ -0.46
CX3CL1P78423 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
CX3CL1P78423 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC12.17□□□□□ -0.46
CX3CL1P78423 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CX3CL1P78423 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CX3CL1P78423 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC12.17□□□□□ -0.46
CX3CL1P78423 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC12.17□□□□□ -0.46
CX3CL1P78423 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC12.17□□□□□ -0.46
CX3CL1P78423 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CX3CL1P78423 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
CX3CL1P78423 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC12.17□□□□□ -0.46
CX3CL1P78423 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
CX3CL1P78423 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC12.17□□□□□ -0.46
CX3CL1P78423 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
CX3CL1P78423 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC12.17□□□□□ -0.46
CX3CL1P78423 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CX3CL1P78423 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CX3CL1P78423 ABR-228ENST00000574437 3196 ntTSL 5 BASIC12.17□□□□□ -0.46
CX3CL1P78423 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CX3CL1P78423 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
CX3CL1P78423 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
CX3CL1P78423 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CX3CL1P78423 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
CX3CL1P78423 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC12.17□□□□□ -0.46
CX3CL1P78423 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC12.17□□□□□ -0.46
CX3CL1P78423 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC12.17□□□□□ -0.46
CX3CL1P78423 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CX3CL1P78423 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
CX3CL1P78423 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC12.17□□□□□ -0.46
CX3CL1P78423 SOCS2P1-201ENST00000417727 557 ntBASIC12.17□□□□□ -0.46
CX3CL1P78423 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CX3CL1P78423 GALT-202ENST00000450095 1280 ntTSL 2 BASIC12.17□□□□□ -0.46
CX3CL1P78423 ELK1P1-201ENST00000485699 580 ntBASIC12.17□□□□□ -0.46
CX3CL1P78423 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
CX3CL1P78423 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC12.17□□□□□ -0.46
CX3CL1P78423 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
CX3CL1P78423 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC12.17□□□□□ -0.46
CX3CL1P78423 AL359711.2-201ENST00000563105 872 ntBASIC12.17□□□□□ -0.46
CX3CL1P78423 TP53TG3HP-202ENST00000569755 579 ntBASIC12.17□□□□□ -0.46
CX3CL1P78423 AC138761.1-201ENST00000584393 385 ntBASIC12.17□□□□□ -0.46
CX3CL1P78423 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC12.17□□□□□ -0.46
CX3CL1P78423 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC12.17□□□□□ -0.46
CX3CL1P78423 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC12.17□□□□□ -0.46
CX3CL1P78423 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CX3CL1P78423 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CX3CL1P78423 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
CX3CL1P78423 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC12.17□□□□□ -0.46
CX3CL1P78423 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC12.17□□□□□ -0.46
CX3CL1P78423 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
CX3CL1P78423 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC12.17□□□□□ -0.46
CX3CL1P78423 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC12.17□□□□□ -0.46
CX3CL1P78423 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC12.17□□□□□ -0.46
CX3CL1P78423 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
CX3CL1P78423 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CX3CL1P78423 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CX3CL1P78423 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC12.17□□□□□ -0.46
CX3CL1P78423 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
CX3CL1P78423 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC12.17□□□□□ -0.46
CX3CL1P78423 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CX3CL1P78423 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC12.17□□□□□ -0.46
CX3CL1P78423 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CX3CL1P78423 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CX3CL1P78423 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC12.17□□□□□ -0.46
CX3CL1P78423 AC117489.1-201ENST00000625169 3217 ntBASIC12.16□□□□□ -0.46
CX3CL1P78423 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CX3CL1P78423 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC12.16□□□□□ -0.46
CX3CL1P78423 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
CX3CL1P78423 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CX3CL1P78423 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
CX3CL1P78423 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
CX3CL1P78423 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
CX3CL1P78423 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CX3CL1P78423 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms