Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC14.27□□□□□ -0.13
LIM2P55344 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC14.27□□□□□ -0.13
LIM2P55344 MTHFR-210ENST00000641407 2387 ntBASIC14.27□□□□□ -0.13
LIM2P55344 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
LIM2P55344 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC14.27□□□□□ -0.13
LIM2P55344 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
LIM2P55344 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.13
LIM2P55344 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
LIM2P55344 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
LIM2P55344 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC14.27□□□□□ -0.13
LIM2P55344 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
LIM2P55344 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.13
LIM2P55344 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
LIM2P55344 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC14.27□□□□□ -0.13
LIM2P55344 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
LIM2P55344 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LIM2P55344 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC14.26□□□□□ -0.13
LIM2P55344 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
LIM2P55344 PKD1P5-201ENST00000532415 10291 ntBASIC14.26□□□□□ -0.13
LIM2P55344 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LIM2P55344 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
LIM2P55344 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
LIM2P55344 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LIM2P55344 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
LIM2P55344 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
LIM2P55344 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
LIM2P55344 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
LIM2P55344 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
LIM2P55344 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
LIM2P55344 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
LIM2P55344 ZBTB12BP-201ENST00000314232 1122 ntBASIC14.26□□□□□ -0.13
LIM2P55344 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LIM2P55344 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
LIM2P55344 KRT43P-201ENST00000434019 910 ntBASIC14.26□□□□□ -0.13
LIM2P55344 C2orf27AP3-201ENST00000434123 579 ntBASIC14.26□□□□□ -0.13
LIM2P55344 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
LIM2P55344 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC14.26□□□□□ -0.13
LIM2P55344 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
LIM2P55344 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
LIM2P55344 APRT-204ENST00000563655 709 ntTSL 5 BASIC14.26□□□□□ -0.13
LIM2P55344 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC14.26□□□□□ -0.13
LIM2P55344 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC14.26□□□□□ -0.13
LIM2P55344 RN7SL48P-201ENST00000579283 293 ntBASIC14.26□□□□□ -0.13
LIM2P55344 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC14.26□□□□□ -0.13
LIM2P55344 AC004466.1-201ENST00000599515 1080 ntBASIC14.26□□□□□ -0.13
LIM2P55344 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC14.26□□□□□ -0.13
LIM2P55344 AL354718.3-201ENST00000616414 581 ntBASIC14.26□□□□□ -0.13
LIM2P55344 ENPP7P14-201ENST00000621765 1040 ntBASIC14.26□□□□□ -0.13
LIM2P55344 AC132938.4-201ENST00000623835 848 ntBASIC14.26□□□□□ -0.13
LIM2P55344 CR382287.1-201ENST00000623954 586 ntBASIC14.26□□□□□ -0.13
LIM2P55344 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC14.26□□□□□ -0.13
LIM2P55344 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC14.26□□□□□ -0.13
LIM2P55344 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LIM2P55344 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
LIM2P55344 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LIM2P55344 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC14.26□□□□□ -0.13
LIM2P55344 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LIM2P55344 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LIM2P55344 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
LIM2P55344 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
LIM2P55344 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
LIM2P55344 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
LIM2P55344 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LIM2P55344 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LIM2P55344 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC14.25□□□□□ -0.13
LIM2P55344 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LIM2P55344 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LIM2P55344 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC14.25□□□□□ -0.13
LIM2P55344 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
LIM2P55344 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC14.25□□□□□ -0.13
LIM2P55344 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC14.25□□□□□ -0.13
LIM2P55344 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
LIM2P55344 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
LIM2P55344 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LIM2P55344 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
LIM2P55344 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
LIM2P55344 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC14.25□□□□□ -0.13
LIM2P55344 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LIM2P55344 AC018529.2-202ENST00000611482 3087 ntBASIC14.25□□□□□ -0.13
LIM2P55344 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LIM2P55344 GUK1-206ENST00000366723 845 ntTSL 5 BASIC14.25□□□□□ -0.13
LIM2P55344 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LIM2P55344 AC016694.1-201ENST00000434179 700 ntBASIC14.25□□□□□ -0.13
LIM2P55344 AC245100.3-201ENST00000441281 285 ntBASIC14.25□□□□□ -0.13
LIM2P55344 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC14.25□□□□□ -0.13
LIM2P55344 FO681548.1-201ENST00000455617 1132 ntBASIC14.25□□□□□ -0.13
LIM2P55344 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC14.25□□□□□ -0.13
LIM2P55344 NAA50-208ENST00000497255 789 ntTSL 5 BASIC14.25□□□□□ -0.13
LIM2P55344 AC106886.1-201ENST00000568660 600 ntBASIC14.25□□□□□ -0.13
LIM2P55344 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
LIM2P55344 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC14.25□□□□□ -0.13
LIM2P55344 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
LIM2P55344 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
LIM2P55344 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LIM2P55344 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LIM2P55344 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
LIM2P55344 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LIM2P55344 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
LIM2P55344 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC14.25□□□□□ -0.13
LIM2P55344 PCDHA3-202ENST00000532566 4594 ntBASIC14.25□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms