Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 AL354718.3-201ENST00000616414 581 ntBASIC16.15■□□□□ 0.18
VCPP55072 CR382287.1-201ENST00000623954 586 ntBASIC16.15■□□□□ 0.18
VCPP55072 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC16.15■□□□□ 0.18
VCPP55072 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VCPP55072 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VCPP55072 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VCPP55072 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VCPP55072 AMT-224ENST00000635808 1610 ntTSL 5 BASIC16.15■□□□□ 0.18
VCPP55072 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC16.15■□□□□ 0.18
VCPP55072 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
VCPP55072 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VCPP55072 AHCYP2-201ENST00000430630 1300 ntBASIC16.15■□□□□ 0.18
VCPP55072 AL365209.1-201ENST00000624418 6473 ntBASIC16.15■□□□□ 0.18
VCPP55072 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
VCPP55072 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC16.15■□□□□ 0.18
VCPP55072 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VCPP55072 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC16.14■□□□□ 0.18
VCPP55072 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC16.14■□□□□ 0.18
VCPP55072 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VCPP55072 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
VCPP55072 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
VCPP55072 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
VCPP55072 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VCPP55072 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VCPP55072 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VCPP55072 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
VCPP55072 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VCPP55072 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC16.14■□□□□ 0.17
VCPP55072 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VCPP55072 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VCPP55072 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VCPP55072 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VCPP55072 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC16.14■□□□□ 0.17
VCPP55072 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VCPP55072 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
VCPP55072 HNRNPA1P32-201ENST00000396326 963 ntBASIC16.14■□□□□ 0.17
VCPP55072 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
VCPP55072 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC16.14■□□□□ 0.17
VCPP55072 CNN2P8-201ENST00000421872 913 ntBASIC16.14■□□□□ 0.17
VCPP55072 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
VCPP55072 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
VCPP55072 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
VCPP55072 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VCPP55072 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC16.14■□□□□ 0.17
VCPP55072 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
VCPP55072 AHRR-211ENST00000515206 462 ntTSL 5 BASIC16.14■□□□□ 0.17
VCPP55072 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
VCPP55072 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC16.14■□□□□ 0.17
VCPP55072 AC026740.1-201ENST00000607068 791 ntBASIC16.14■□□□□ 0.17
VCPP55072 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC16.14■□□□□ 0.17
VCPP55072 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VCPP55072 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VCPP55072 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
VCPP55072 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VCPP55072 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VCPP55072 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC16.14■□□□□ 0.17
VCPP55072 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
VCPP55072 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC16.14■□□□□ 0.17
VCPP55072 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VCPP55072 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VCPP55072 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VCPP55072 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VCPP55072 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC16.14■□□□□ 0.17
VCPP55072 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VCPP55072 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC16.13■□□□□ 0.17
VCPP55072 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VCPP55072 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VCPP55072 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VCPP55072 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC16.13■□□□□ 0.17
VCPP55072 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VCPP55072 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
VCPP55072 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VCPP55072 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC16.13■□□□□ 0.17
VCPP55072 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VCPP55072 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
VCPP55072 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VCPP55072 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
VCPP55072 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
VCPP55072 MPV17-204ENST00000399052 749 ntTSL 4 BASIC16.13■□□□□ 0.17
VCPP55072 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
VCPP55072 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC16.13■□□□□ 0.17
VCPP55072 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC16.13■□□□□ 0.17
VCPP55072 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC16.13■□□□□ 0.17
VCPP55072 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC16.13■□□□□ 0.17
VCPP55072 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC16.13■□□□□ 0.17
VCPP55072 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC16.13■□□□□ 0.17
VCPP55072 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC16.13■□□□□ 0.17
VCPP55072 AP001063.1-201ENST00000568332 529 ntBASIC16.13■□□□□ 0.17
VCPP55072 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC16.13■□□□□ 0.17
VCPP55072 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC16.13■□□□□ 0.17
VCPP55072 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC16.13■□□□□ 0.17
VCPP55072 METTL26-214ENST00000614890 801 ntTSL 3 BASIC16.13■□□□□ 0.17
VCPP55072 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VCPP55072 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VCPP55072 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VCPP55072 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VCPP55072 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VCPP55072 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VCPP55072 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
VCPP55072 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 64.9 ms