Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC12.39□□□□□ -0.43
CDX1P47902 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
CDX1P47902 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
CDX1P47902 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC12.39□□□□□ -0.43
CDX1P47902 ZBTB45P2-201ENST00000452245 1531 ntBASIC12.39□□□□□ -0.43
CDX1P47902 TASP1-201ENST00000337743 2352 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
CDX1P47902 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
CDX1P47902 CALY-202ENST00000368555 783 ntTSL 2 BASIC12.39□□□□□ -0.43
CDX1P47902 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC12.39□□□□□ -0.43
CDX1P47902 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
CDX1P47902 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC12.39□□□□□ -0.43
CDX1P47902 MIR648-201ENST00000385046 94 ntBASIC12.39□□□□□ -0.43
CDX1P47902 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC12.39□□□□□ -0.43
CDX1P47902 HIST3H2BA-201ENST00000436555 524 ntBASIC12.39□□□□□ -0.43
CDX1P47902 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC12.39□□□□□ -0.43
CDX1P47902 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC12.39□□□□□ -0.43
CDX1P47902 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
CDX1P47902 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC12.39□□□□□ -0.43
CDX1P47902 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC12.39□□□□□ -0.43
CDX1P47902 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC12.39□□□□□ -0.43
CDX1P47902 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC12.39□□□□□ -0.43
CDX1P47902 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC12.39□□□□□ -0.43
CDX1P47902 SPIB-207ENST00000597855 564 ntTSL 4 BASIC12.39□□□□□ -0.43
CDX1P47902 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC12.39□□□□□ -0.43
CDX1P47902 AC074044.1-201ENST00000609673 707 ntBASIC12.39□□□□□ -0.43
CDX1P47902 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
CDX1P47902 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
CDX1P47902 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
CDX1P47902 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
CDX1P47902 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
CDX1P47902 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC12.39□□□□□ -0.43
CDX1P47902 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
CDX1P47902 AL391825.1-201ENST00000457671 1364 ntBASIC12.39□□□□□ -0.43
CDX1P47902 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
CDX1P47902 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
CDX1P47902 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
CDX1P47902 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC12.39□□□□□ -0.43
CDX1P47902 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC12.39□□□□□ -0.43
CDX1P47902 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
CDX1P47902 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
CDX1P47902 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
CDX1P47902 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
CDX1P47902 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
CDX1P47902 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
CDX1P47902 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CDX1P47902 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC12.38□□□□□ -0.43
CDX1P47902 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC12.38□□□□□ -0.43
CDX1P47902 AMT-221ENST00000538581 2038 ntTSL 2 BASIC12.38□□□□□ -0.43
CDX1P47902 TRIM10-204ENST00000449742 3546 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CDX1P47902 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
CDX1P47902 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
CDX1P47902 TNN-203ENST00000622870 3719 ntTSL 5 BASIC12.38□□□□□ -0.43
CDX1P47902 SAMD15-201ENST00000216471 2564 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
CDX1P47902 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC12.38□□□□□ -0.43
CDX1P47902 IL21R-204ENST00000564089 3009 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
CDX1P47902 FUT8-202ENST00000358307 2664 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CDX1P47902 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC12.38□□□□□ -0.43
CDX1P47902 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CDX1P47902 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC12.38□□□□□ -0.43
CDX1P47902 GLB1L3-201ENST00000389887 3566 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CDX1P47902 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
CDX1P47902 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CDX1P47902 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
CDX1P47902 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
CDX1P47902 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CDX1P47902 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC12.38□□□□□ -0.43
CDX1P47902 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CDX1P47902 NTM-202ENST00000374786 3190 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CDX1P47902 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CDX1P47902 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CDX1P47902 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CDX1P47902 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
CDX1P47902 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC12.38□□□□□ -0.43
CDX1P47902 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CDX1P47902 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CDX1P47902 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
CDX1P47902 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CDX1P47902 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC12.38□□□□□ -0.43
CDX1P47902 MEP1AP4-201ENST00000423244 1087 ntBASIC12.38□□□□□ -0.43
CDX1P47902 AL353779.1-201ENST00000434793 351 ntBASIC12.38□□□□□ -0.43
CDX1P47902 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC12.38□□□□□ -0.43
CDX1P47902 RAB35-202ENST00000534951 939 ntTSL 2 BASIC12.38□□□□□ -0.43
CDX1P47902 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC12.38□□□□□ -0.43
CDX1P47902 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC12.38□□□□□ -0.43
CDX1P47902 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC12.38□□□□□ -0.43
CDX1P47902 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC12.38□□□□□ -0.43
CDX1P47902 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
CDX1P47902 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CDX1P47902 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC12.38□□□□□ -0.43
CDX1P47902 AL358472.5-202ENST00000641448 1267 ntBASIC12.38□□□□□ -0.43
CDX1P47902 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CDX1P47902 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CDX1P47902 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CDX1P47902 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CDX1P47902 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
CDX1P47902 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CDX1P47902 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
CDX1P47902 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CDX1P47902 CHMP7-202ENST00000397677 3403 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CDX1P47902 BNIP3P1-202ENST00000550043 1585 ntBASIC12.38□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms