Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
PTPN9P43378 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PTPN9P43378 AC092135.3-201ENST00000624151 1846 ntBASIC15.58■□□□□ 0.08
PTPN9P43378 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.08
PTPN9P43378 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PTPN9P43378 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PTPN9P43378 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.08
PTPN9P43378 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PTPN9P43378 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC15.58■□□□□ 0.08
PTPN9P43378 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
PTPN9P43378 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
PTPN9P43378 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
PTPN9P43378 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PTPN9P43378 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC15.58■□□□□ 0.08
PTPN9P43378 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
PTPN9P43378 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
PTPN9P43378 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
PTPN9P43378 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC15.57■□□□□ 0.08
PTPN9P43378 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PTPN9P43378 ANKRD30BP2-201ENST00000435744 1610 ntBASIC15.57■□□□□ 0.08
PTPN9P43378 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
PTPN9P43378 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
PTPN9P43378 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC15.57■□□□□ 0.08
PTPN9P43378 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
PTPN9P43378 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
PTPN9P43378 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PTPN9P43378 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PTPN9P43378 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
PTPN9P43378 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
PTPN9P43378 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
PTPN9P43378 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PTPN9P43378 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
PTPN9P43378 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PTPN9P43378 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC15.57■□□□□ 0.08
PTPN9P43378 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PTPN9P43378 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PTPN9P43378 AC006001.1-201ENST00000325130 474 ntBASIC15.57■□□□□ 0.08
PTPN9P43378 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
PTPN9P43378 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PTPN9P43378 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PTPN9P43378 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC15.57■□□□□ 0.08
PTPN9P43378 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PTPN9P43378 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PTPN9P43378 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PTPN9P43378 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PTPN9P43378 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PTPN9P43378 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC15.57■□□□□ 0.08
PTPN9P43378 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC15.57■□□□□ 0.08
PTPN9P43378 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC15.57■□□□□ 0.08
PTPN9P43378 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PTPN9P43378 AP000812.2-201ENST00000538934 718 ntBASIC15.57■□□□□ 0.08
PTPN9P43378 RBM7-207ENST00000544582 692 ntTSL 3 BASIC15.57■□□□□ 0.08
PTPN9P43378 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC15.57■□□□□ 0.08
PTPN9P43378 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
PTPN9P43378 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
PTPN9P43378 AL162274.1-201ENST00000617191 1098 ntBASIC15.57■□□□□ 0.08
PTPN9P43378 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC15.57■□□□□ 0.08
PTPN9P43378 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
PTPN9P43378 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC15.57■□□□□ 0.08
PTPN9P43378 MRPL37P1-201ENST00000592451 1337 ntBASIC15.57■□□□□ 0.08
PTPN9P43378 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PTPN9P43378 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC15.57■□□□□ 0.08
PTPN9P43378 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PTPN9P43378 PCDHA3-202ENST00000532566 4594 ntBASIC15.57■□□□□ 0.08
PTPN9P43378 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC15.57■□□□□ 0.08
PTPN9P43378 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PTPN9P43378 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PTPN9P43378 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC15.57■□□□□ 0.08
PTPN9P43378 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC15.57■□□□□ 0.08
PTPN9P43378 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC15.57■□□□□ 0.08
PTPN9P43378 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PTPN9P43378 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC15.57■□□□□ 0.08
PTPN9P43378 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
PTPN9P43378 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC15.57■□□□□ 0.08
PTPN9P43378 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC15.56■□□□□ 0.08
PTPN9P43378 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN9P43378 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC15.56■□□□□ 0.08
PTPN9P43378 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN9P43378 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
PTPN9P43378 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN9P43378 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
PTPN9P43378 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC15.56■□□□□ 0.08
PTPN9P43378 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC15.56■□□□□ 0.08
PTPN9P43378 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN9P43378 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN9P43378 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
PTPN9P43378 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN9P43378 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC15.56■□□□□ 0.08
PTPN9P43378 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN9P43378 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN9P43378 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN9P43378 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC15.56■□□□□ 0.08
PTPN9P43378 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
PTPN9P43378 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC15.56■□□□□ 0.08
PTPN9P43378 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
PTPN9P43378 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN9P43378 MPV17-205ENST00000402310 906 ntTSL 5 BASIC15.56■□□□□ 0.08
PTPN9P43378 BOLA2P3-201ENST00000404566 256 ntBASIC15.56■□□□□ 0.08
PTPN9P43378 HIST1H2BPS3-201ENST00000419683 341 ntBASIC15.56■□□□□ 0.08
PTPN9P43378 FAM8A4P-201ENST00000435433 1213 ntBASIC15.56■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 59.1 ms