Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RFC4P35249 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RFC4P35249 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
RFC4P35249 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RFC4P35249 HNRNPA1P27-201ENST00000412087 955 ntBASIC18.62■□□□□ 0.57
RFC4P35249 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RFC4P35249 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC18.62■□□□□ 0.57
RFC4P35249 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC18.62■□□□□ 0.57
RFC4P35249 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
RFC4P35249 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RFC4P35249 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC18.62■□□□□ 0.57
RFC4P35249 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC18.62■□□□□ 0.57
RFC4P35249 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
RFC4P35249 AC007292.2-201ENST00000593524 1812 ntBASIC18.62■□□□□ 0.57
RFC4P35249 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC18.62■□□□□ 0.57
RFC4P35249 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RFC4P35249 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RFC4P35249 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RFC4P35249 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
RFC4P35249 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
RFC4P35249 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC18.62■□□□□ 0.57
RFC4P35249 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC18.62■□□□□ 0.57
RFC4P35249 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RFC4P35249 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC18.62■□□□□ 0.57
RFC4P35249 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RFC4P35249 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
RFC4P35249 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFC4P35249 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFC4P35249 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFC4P35249 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFC4P35249 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
RFC4P35249 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RFC4P35249 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC18.61■□□□□ 0.57
RFC4P35249 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC18.61■□□□□ 0.57
RFC4P35249 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC18.61■□□□□ 0.57
RFC4P35249 REXO1L2P-201ENST00000425429 2069 ntBASIC18.61■□□□□ 0.57
RFC4P35249 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFC4P35249 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC18.61■□□□□ 0.57
RFC4P35249 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFC4P35249 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RFC4P35249 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFC4P35249 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RFC4P35249 AC090502.4-201ENST00000551714 1386 ntBASIC18.61■□□□□ 0.57
RFC4P35249 AHCYP4-201ENST00000419201 1315 ntBASIC18.61■□□□□ 0.57
RFC4P35249 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC18.61■□□□□ 0.57
RFC4P35249 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC18.61■□□□□ 0.57
RFC4P35249 PTPA-215ENST00000432124 567 ntTSL 4 BASIC18.61■□□□□ 0.57
RFC4P35249 PPOX-204ENST00000462866 473 ntTSL 5 BASIC18.61■□□□□ 0.57
RFC4P35249 ORAOV1P1-201ENST00000503108 395 ntBASIC18.61■□□□□ 0.57
RFC4P35249 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC18.61■□□□□ 0.57
RFC4P35249 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RFC4P35249 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFC4P35249 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RFC4P35249 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFC4P35249 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC18.61■□□□□ 0.57
RFC4P35249 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RFC4P35249 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
RFC4P35249 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RFC4P35249 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFC4P35249 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RFC4P35249 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFC4P35249 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC18.61■□□□□ 0.57
RFC4P35249 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFC4P35249 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFC4P35249 AP000845.1-201ENST00000581677 2131 ntBASIC18.61■□□□□ 0.57
RFC4P35249 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFC4P35249 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC18.61■□□□□ 0.57
RFC4P35249 DKFZP434H168-201ENST00000567381 1905 ntBASIC18.61■□□□□ 0.57
RFC4P35249 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RFC4P35249 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RFC4P35249 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RFC4P35249 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
RFC4P35249 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RFC4P35249 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
RFC4P35249 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC18.6■□□□□ 0.57
RFC4P35249 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RFC4P35249 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC18.6■□□□□ 0.57
RFC4P35249 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC18.6■□□□□ 0.57
RFC4P35249 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RFC4P35249 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RFC4P35249 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RFC4P35249 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RFC4P35249 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RFC4P35249 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RFC4P35249 AC092638.2-201ENST00000441105 947 ntBASIC18.6■□□□□ 0.57
RFC4P35249 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RFC4P35249 REEP5-205ENST00000504247 480 ntTSL 5 BASIC18.6■□□□□ 0.57
RFC4P35249 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC18.6■□□□□ 0.57
RFC4P35249 ALG1L6P-201ENST00000515248 758 ntBASIC18.6■□□□□ 0.57
RFC4P35249 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RFC4P35249 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RFC4P35249 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC18.6■□□□□ 0.57
RFC4P35249 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
RFC4P35249 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC18.6■□□□□ 0.57
RFC4P35249 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC18.6■□□□□ 0.57
RFC4P35249 AC138466.4-201ENST00000623965 852 ntBASIC18.6■□□□□ 0.57
RFC4P35249 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC18.6■□□□□ 0.57
RFC4P35249 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RFC4P35249 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RFC4P35249 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms