Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
SHMT2P34897 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC14.76□□□□□ -0.05
SHMT2P34897 AC016694.1-201ENST00000434179 700 ntBASIC14.76□□□□□ -0.05
SHMT2P34897 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC14.76□□□□□ -0.05
SHMT2P34897 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC14.76□□□□□ -0.05
SHMT2P34897 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
SHMT2P34897 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
SHMT2P34897 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC14.76□□□□□ -0.05
SHMT2P34897 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC14.76□□□□□ -0.05
SHMT2P34897 AC145423.3-201ENST00000615987 467 ntBASIC14.76□□□□□ -0.05
SHMT2P34897 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SHMT2P34897 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SHMT2P34897 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
SHMT2P34897 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
SHMT2P34897 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC14.76□□□□□ -0.05
SHMT2P34897 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
SHMT2P34897 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
SHMT2P34897 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SHMT2P34897 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SHMT2P34897 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SHMT2P34897 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC14.76□□□□□ -0.05
SHMT2P34897 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SHMT2P34897 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC14.76□□□□□ -0.05
SHMT2P34897 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
SHMT2P34897 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SHMT2P34897 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
SHMT2P34897 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SHMT2P34897 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
SHMT2P34897 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC14.75□□□□□ -0.05
SHMT2P34897 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC14.75□□□□□ -0.05
SHMT2P34897 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
SHMT2P34897 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SHMT2P34897 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SHMT2P34897 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
SHMT2P34897 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SHMT2P34897 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC14.75□□□□□ -0.05
SHMT2P34897 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC14.75□□□□□ -0.05
SHMT2P34897 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
SHMT2P34897 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SHMT2P34897 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SHMT2P34897 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
SHMT2P34897 HLA-K-203ENST00000430151 1046 ntBASIC14.75□□□□□ -0.05
SHMT2P34897 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
SHMT2P34897 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC14.75□□□□□ -0.05
SHMT2P34897 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC14.75□□□□□ -0.05
SHMT2P34897 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC14.75□□□□□ -0.05
SHMT2P34897 ACA64.2-201ENST00000459014 129 ntBASIC14.75□□□□□ -0.05
SHMT2P34897 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
SHMT2P34897 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC14.75□□□□□ -0.05
SHMT2P34897 AL512343.1-201ENST00000605837 169 ntBASIC14.75□□□□□ -0.05
SHMT2P34897 AC017083.2-201ENST00000608069 979 ntBASIC14.75□□□□□ -0.05
SHMT2P34897 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC14.75□□□□□ -0.05
SHMT2P34897 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC14.75□□□□□ -0.05
SHMT2P34897 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SHMT2P34897 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
SHMT2P34897 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
SHMT2P34897 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SHMT2P34897 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
SHMT2P34897 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
SHMT2P34897 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SHMT2P34897 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
SHMT2P34897 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
SHMT2P34897 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC14.75□□□□□ -0.05
SHMT2P34897 ABR-228ENST00000574437 3196 ntTSL 5 BASIC14.75□□□□□ -0.05
SHMT2P34897 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SHMT2P34897 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
SHMT2P34897 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC14.75□□□□□ -0.05
SHMT2P34897 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
SHMT2P34897 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SHMT2P34897 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SHMT2P34897 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SHMT2P34897 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
SHMT2P34897 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SHMT2P34897 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC14.74□□□□□ -0.05
SHMT2P34897 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC14.74□□□□□ -0.05
SHMT2P34897 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SHMT2P34897 AC140479.7-201ENST00000636301 2332 ntBASIC14.74□□□□□ -0.05
SHMT2P34897 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SHMT2P34897 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
SHMT2P34897 GUK1-206ENST00000366723 845 ntTSL 5 BASIC14.74□□□□□ -0.05
SHMT2P34897 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SHMT2P34897 PGF-202ENST00000405431 666 ntTSL 5 BASIC14.74□□□□□ -0.05
SHMT2P34897 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
SHMT2P34897 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC14.74□□□□□ -0.05
SHMT2P34897 AC007551.1-201ENST00000457394 519 ntBASIC14.74□□□□□ -0.05
SHMT2P34897 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC14.74□□□□□ -0.05
SHMT2P34897 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC14.74□□□□□ -0.05
SHMT2P34897 FTH1P14-201ENST00000482930 551 ntBASIC14.74□□□□□ -0.05
SHMT2P34897 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC14.74□□□□□ -0.05
SHMT2P34897 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC14.74□□□□□ -0.05
SHMT2P34897 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC14.74□□□□□ -0.05
SHMT2P34897 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
SHMT2P34897 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC14.74□□□□□ -0.05
SHMT2P34897 PUDP-206ENST00000540122 825 ntTSL 2 BASIC14.74□□□□□ -0.05
SHMT2P34897 HILS1-202ENST00000545329 423 ntBASIC14.74□□□□□ -0.05
SHMT2P34897 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
SHMT2P34897 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC14.74□□□□□ -0.05
SHMT2P34897 AC025279.2-201ENST00000569730 653 ntBASIC14.74□□□□□ -0.05
SHMT2P34897 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC14.74□□□□□ -0.05
SHMT2P34897 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC14.74□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 59.9 ms