Protein–RNA interactions for Protein: P33552

CKS2, Cyclin-dependent kinases regulatory subunit 2, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS2P33552 PDK2-203ENST00000503176 3440 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CKS2P33552 TP53INP2-202ENST00000374810 4184 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CKS2P33552 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
CKS2P33552 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CKS2P33552 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC11.12□□□□□ -0.63
CKS2P33552 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
CKS2P33552 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
CKS2P33552 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
CKS2P33552 GSE1-201ENST00000253458 7495 ntAPPRIS P3 TSL 5 BASIC11.12□□□□□ -0.63
CKS2P33552 LRRC32-201ENST00000260061 4207 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CKS2P33552 PPP1R12A-201ENST00000261207 5582 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
CKS2P33552 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CKS2P33552 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
CKS2P33552 LINC02346-201ENST00000383019 1967 ntTSL 2 BASIC11.12□□□□□ -0.63
CKS2P33552 MIR497HG-202ENST00000572453 3838 ntBASIC11.12□□□□□ -0.63
CKS2P33552 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
CKS2P33552 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC11.12□□□□□ -0.63
CKS2P33552 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
CKS2P33552 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
CKS2P33552 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CKS2P33552 SLC16A1-201ENST00000369626 3910 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CKS2P33552 AFDN-206ENST00000392112 7459 ntTSL 5 BASIC11.12□□□□□ -0.63
CKS2P33552 LDB3-209ENST00000623056 2314 ntTSL 5 BASIC11.12□□□□□ -0.63
CKS2P33552 ANKRD52-201ENST00000267116 8688 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CKS2P33552 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC11.12□□□□□ -0.63
CKS2P33552 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC11.12□□□□□ -0.63
CKS2P33552 STOX2-201ENST00000308497 10458 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CKS2P33552 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
CKS2P33552 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC11.12□□□□□ -0.63
CKS2P33552 TRPM4-201ENST00000252826 4109 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CKS2P33552 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
CKS2P33552 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
CKS2P33552 SGMS1-203ENST00000429490 3634 ntTSL 5 BASIC11.11□□□□□ -0.63
CKS2P33552 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
CKS2P33552 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC11.11□□□□□ -0.63
CKS2P33552 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC11.11□□□□□ -0.63
CKS2P33552 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
CKS2P33552 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
CKS2P33552 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC11.11□□□□□ -0.63
CKS2P33552 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
CKS2P33552 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
CKS2P33552 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
CKS2P33552 DHX38-201ENST00000268482 4608 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CKS2P33552 ZFP36L2-201ENST00000282388 3696 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CKS2P33552 BCKDHB-201ENST00000320393 3692 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CKS2P33552 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC11.11□□□□□ -0.63
CKS2P33552 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CKS2P33552 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CKS2P33552 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
CKS2P33552 TMEM248-201ENST00000341567 4229 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CKS2P33552 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC11.11□□□□□ -0.63
CKS2P33552 TBC1D24-201ENST00000293970 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CKS2P33552 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
CKS2P33552 CBR1-202ENST00000399191 838 ntTSL 3 BASIC11.11□□□□□ -0.63
CKS2P33552 AZGP1P1-201ENST00000411909 902 ntBASIC11.11□□□□□ -0.63
CKS2P33552 IGLL3P-201ENST00000412472 434 ntBASIC11.11□□□□□ -0.63
CKS2P33552 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC11.11□□□□□ -0.63
CKS2P33552 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC11.11□□□□□ -0.63
CKS2P33552 RHOQP3-201ENST00000437982 621 ntBASIC11.11□□□□□ -0.63
CKS2P33552 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC11.11□□□□□ -0.63
CKS2P33552 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC11.11□□□□□ -0.63
CKS2P33552 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC11.11□□□□□ -0.63
CKS2P33552 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC11.11□□□□□ -0.63
CKS2P33552 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC11.11□□□□□ -0.63
CKS2P33552 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC11.11□□□□□ -0.63
CKS2P33552 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC11.11□□□□□ -0.63
CKS2P33552 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC11.11□□□□□ -0.63
CKS2P33552 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC11.11□□□□□ -0.63
CKS2P33552 AC010507.1-201ENST00000633895 436 ntBASIC11.11□□□□□ -0.63
CKS2P33552 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
CKS2P33552 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
CKS2P33552 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
CKS2P33552 KLHL7-202ENST00000339077 5620 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CKS2P33552 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC11.11□□□□□ -0.63
CKS2P33552 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CKS2P33552 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC11.11□□□□□ -0.63
CKS2P33552 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC11.11□□□□□ -0.63
CKS2P33552 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC11.11□□□□□ -0.63
CKS2P33552 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CKS2P33552 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC11.11□□□□□ -0.63
CKS2P33552 NLRC3-202ENST00000359128 6401 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CKS2P33552 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CKS2P33552 KRT8P24-201ENST00000560290 1559 ntBASIC11.11□□□□□ -0.63
CKS2P33552 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
CKS2P33552 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC11.11□□□□□ -0.63
CKS2P33552 CAP2-209ENST00000616440 2776 ntTSL 2 BASIC11.11□□□□□ -0.63
CKS2P33552 PLEKHG2-206ENST00000458508 3898 ntAPPRIS ALT2 TSL 2 BASIC11.1□□□□□ -0.63
CKS2P33552 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
CKS2P33552 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
CKS2P33552 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
CKS2P33552 SMAD2-203ENST00000402690 12075 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
CKS2P33552 AC016397.2-201ENST00000624848 1985 ntBASIC11.1□□□□□ -0.63
CKS2P33552 COL6A3-203ENST00000353578 9963 ntTSL 5 BASIC11.1□□□□□ -0.63
CKS2P33552 CAPN5-201ENST00000278559 4397 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
CKS2P33552 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC11.1□□□□□ -0.63
CKS2P33552 STAG3-206ENST00000426455 4450 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
CKS2P33552 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
CKS2P33552 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
CKS2P33552 ARID4A-202ENST00000355431 5891 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
CKS2P33552 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC11.1□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 89.2 ms