Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC15.19■□□□□ 0.02
PTPN4P29074 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTPN4P29074 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTPN4P29074 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PTPN4P29074 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC15.19■□□□□ 0.02
PTPN4P29074 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTPN4P29074 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC15.19■□□□□ 0.02
PTPN4P29074 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC15.19■□□□□ 0.02
PTPN4P29074 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
PTPN4P29074 BNIP3P1-202ENST00000550043 1585 ntBASIC15.19■□□□□ 0.02
PTPN4P29074 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
PTPN4P29074 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PTPN4P29074 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTPN4P29074 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC15.19■□□□□ 0.02
PTPN4P29074 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC15.18■□□□□ 0.02
PTPN4P29074 AC018529.2-202ENST00000611482 3087 ntBASIC15.18■□□□□ 0.02
PTPN4P29074 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
PTPN4P29074 AC015802.1-201ENST00000588104 1449 ntBASIC15.18■□□□□ 0.02
PTPN4P29074 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTPN4P29074 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTPN4P29074 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC15.18■□□□□ 0.02
PTPN4P29074 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTPN4P29074 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
PTPN4P29074 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
PTPN4P29074 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTPN4P29074 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PTPN4P29074 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTPN4P29074 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC15.18■□□□□ 0.02
PTPN4P29074 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PTPN4P29074 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PTPN4P29074 CD81-207ENST00000481687 890 ntTSL 2 BASIC15.18■□□□□ 0.02
PTPN4P29074 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC15.18■□□□□ 0.02
PTPN4P29074 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC15.18■□□□□ 0.02
PTPN4P29074 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC15.18■□□□□ 0.02
PTPN4P29074 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PTPN4P29074 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTPN4P29074 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PTPN4P29074 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTPN4P29074 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC15.18■□□□□ 0.02
PTPN4P29074 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC15.18■□□□□ 0.02
PTPN4P29074 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PTPN4P29074 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
PTPN4P29074 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTPN4P29074 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC15.18■□□□□ 0.02
PTPN4P29074 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN4P29074 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
PTPN4P29074 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN4P29074 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN4P29074 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC15.17■□□□□ 0.02
PTPN4P29074 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN4P29074 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN4P29074 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC15.17■□□□□ 0.02
PTPN4P29074 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
PTPN4P29074 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN4P29074 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN4P29074 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN4P29074 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN4P29074 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC15.17■□□□□ 0.02
PTPN4P29074 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN4P29074 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
PTPN4P29074 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN4P29074 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN4P29074 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN4P29074 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC15.17■□□□□ 0.02
PTPN4P29074 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN4P29074 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
PTPN4P29074 DGCR5-201ENST00000399539 862 ntBASIC15.17■□□□□ 0.02
PTPN4P29074 AP006294.1-201ENST00000415407 339 ntBASIC15.17■□□□□ 0.02
PTPN4P29074 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC15.17■□□□□ 0.02
PTPN4P29074 MEIS3P1-201ENST00000495167 958 ntBASIC15.17■□□□□ 0.02
PTPN4P29074 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC15.17■□□□□ 0.02
PTPN4P29074 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC15.17■□□□□ 0.02
PTPN4P29074 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN4P29074 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN4P29074 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC15.17■□□□□ 0.02
PTPN4P29074 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC15.17■□□□□ 0.02
PTPN4P29074 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC15.17■□□□□ 0.02
PTPN4P29074 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC15.17■□□□□ 0.02
PTPN4P29074 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN4P29074 AL008721.1-201ENST00000609964 604 ntBASIC15.17■□□□□ 0.02
PTPN4P29074 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC15.17■□□□□ 0.02
PTPN4P29074 5S_rRNA.22-201ENST00000614916 106 ntBASIC15.17■□□□□ 0.02
PTPN4P29074 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC15.17■□□□□ 0.02
PTPN4P29074 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC15.17■□□□□ 0.02
PTPN4P29074 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN4P29074 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
PTPN4P29074 GALC-206ENST00000544807 2528 ntTSL 2 BASIC15.17■□□□□ 0.02
PTPN4P29074 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN4P29074 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC15.17■□□□□ 0.02
PTPN4P29074 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN4P29074 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC15.17■□□□□ 0.02
PTPN4P29074 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN4P29074 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN4P29074 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC15.17■□□□□ 0.02
PTPN4P29074 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
PTPN4P29074 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC15.17■□□□□ 0.02
PTPN4P29074 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC15.17■□□□□ 0.02
PTPN4P29074 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
PTPN4P29074 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC15.17■□□□□ 0.02
PTPN4P29074 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 73.4 ms