Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
MSX1P28360 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC13.81□□□□□ -0.2
MSX1P28360 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC13.81□□□□□ -0.2
MSX1P28360 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
MSX1P28360 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
MSX1P28360 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
MSX1P28360 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC13.81□□□□□ -0.2
MSX1P28360 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
MSX1P28360 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC13.81□□□□□ -0.2
MSX1P28360 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
MSX1P28360 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
MSX1P28360 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
MSX1P28360 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC13.81□□□□□ -0.2
MSX1P28360 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC13.81□□□□□ -0.2
MSX1P28360 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
MSX1P28360 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
MSX1P28360 AL137783.1-201ENST00000623494 1896 ntBASIC13.81□□□□□ -0.2
MSX1P28360 ZEB1-AS1-208ENST00000607166 2503 ntBASIC13.81□□□□□ -0.2
MSX1P28360 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
MSX1P28360 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
MSX1P28360 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
MSX1P28360 MPV17-206ENST00000402722 827 ntTSL 3 BASIC13.81□□□□□ -0.2
MSX1P28360 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
MSX1P28360 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC13.81□□□□□ -0.2
MSX1P28360 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC13.81□□□□□ -0.2
MSX1P28360 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC13.81□□□□□ -0.2
MSX1P28360 MYB-242ENST00000618728 3545 ntTSL 5 BASIC13.81□□□□□ -0.2
MSX1P28360 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
MSX1P28360 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
MSX1P28360 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC13.81□□□□□ -0.2
MSX1P28360 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
MSX1P28360 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC13.81□□□□□ -0.2
MSX1P28360 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
MSX1P28360 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
MSX1P28360 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
MSX1P28360 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
MSX1P28360 AC091951.1-201ENST00000512854 2465 ntBASIC13.81□□□□□ -0.2
MSX1P28360 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
MSX1P28360 GPI-205ENST00000586425 1799 ntTSL 5 BASIC13.81□□□□□ -0.2
MSX1P28360 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
MSX1P28360 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
MSX1P28360 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC13.8□□□□□ -0.2
MSX1P28360 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
MSX1P28360 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC13.8□□□□□ -0.2
MSX1P28360 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
MSX1P28360 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
MSX1P28360 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC13.8□□□□□ -0.2
MSX1P28360 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC13.8□□□□□ -0.2
MSX1P28360 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
MSX1P28360 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
MSX1P28360 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
MSX1P28360 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
MSX1P28360 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
MSX1P28360 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
MSX1P28360 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC13.8□□□□□ -0.2
MSX1P28360 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
MSX1P28360 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
MSX1P28360 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
MSX1P28360 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
MSX1P28360 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
MSX1P28360 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
MSX1P28360 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
MSX1P28360 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC13.8□□□□□ -0.2
MSX1P28360 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC13.8□□□□□ -0.2
MSX1P28360 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC13.8□□□□□ -0.2
MSX1P28360 C2orf27AP3-201ENST00000434123 579 ntBASIC13.8□□□□□ -0.2
MSX1P28360 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC13.8□□□□□ -0.2
MSX1P28360 AC099548.2-209ENST00000480264 625 ntBASIC13.8□□□□□ -0.2
MSX1P28360 FTH1P14-201ENST00000482930 551 ntBASIC13.8□□□□□ -0.2
MSX1P28360 AC108725.1-201ENST00000495472 409 ntBASIC13.8□□□□□ -0.2
MSX1P28360 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC13.8□□□□□ -0.2
MSX1P28360 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC13.8□□□□□ -0.2
MSX1P28360 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC13.8□□□□□ -0.2
MSX1P28360 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
MSX1P28360 DERL2-202ENST00000570848 657 ntTSL 5 BASIC13.8□□□□□ -0.2
MSX1P28360 RN7SL48P-201ENST00000579283 293 ntBASIC13.8□□□□□ -0.2
MSX1P28360 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC13.8□□□□□ -0.2
MSX1P28360 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC13.8□□□□□ -0.2
MSX1P28360 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC13.8□□□□□ -0.2
MSX1P28360 AC145423.3-201ENST00000615987 467 ntBASIC13.8□□□□□ -0.2
MSX1P28360 AL354718.3-201ENST00000616414 581 ntBASIC13.8□□□□□ -0.2
MSX1P28360 CR382287.1-201ENST00000623954 586 ntBASIC13.8□□□□□ -0.2
MSX1P28360 AC022726.2-201ENST00000634673 547 ntBASIC13.8□□□□□ -0.2
MSX1P28360 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
MSX1P28360 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
MSX1P28360 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
MSX1P28360 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
MSX1P28360 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
MSX1P28360 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC13.8□□□□□ -0.2
MSX1P28360 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
MSX1P28360 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC13.8□□□□□ -0.2
MSX1P28360 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC13.8□□□□□ -0.2
MSX1P28360 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
MSX1P28360 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC13.8□□□□□ -0.2
MSX1P28360 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
MSX1P28360 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
MSX1P28360 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
MSX1P28360 POR-201ENST00000394893 2532 ntTSL 5 BASIC13.8□□□□□ -0.2
MSX1P28360 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC13.8□□□□□ -0.2
MSX1P28360 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC13.8□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 64.5 ms