Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
TPM1P09493 CRYBG1-201ENST00000369066 7553 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
TPM1P09493 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TPM1P09493 WNT5A-202ENST00000474267 6042 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
TPM1P09493 SLC4A5-201ENST00000346834 6233 ntAPPRIS P4 TSL 5 BASIC16.65■□□□□ 0.26
TPM1P09493 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC16.65■□□□□ 0.26
TPM1P09493 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TPM1P09493 KIF1A-213ENST00000498729 9221 ntTSL 5 BASIC16.65■□□□□ 0.26
TPM1P09493 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TPM1P09493 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
TPM1P09493 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
TPM1P09493 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
TPM1P09493 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC16.65■□□□□ 0.26
TPM1P09493 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
TPM1P09493 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
TPM1P09493 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
TPM1P09493 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
TPM1P09493 ADAMTS13-202ENST00000356589 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.26
TPM1P09493 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC16.64■□□□□ 0.25
TPM1P09493 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC16.64■□□□□ 0.25
TPM1P09493 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
TPM1P09493 EPB41L1-202ENST00000338074 6266 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
TPM1P09493 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
TPM1P09493 RTN4-202ENST00000337526 4790 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TPM1P09493 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TPM1P09493 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
TPM1P09493 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TPM1P09493 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
TPM1P09493 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TPM1P09493 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
TPM1P09493 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TPM1P09493 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TPM1P09493 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC16.64■□□□□ 0.25
TPM1P09493 SPDYE14P-201ENST00000442619 822 ntBASIC16.64■□□□□ 0.25
TPM1P09493 ALG1L5P-201ENST00000482043 771 ntBASIC16.64■□□□□ 0.25
TPM1P09493 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC16.64■□□□□ 0.25
TPM1P09493 AC026150.2-201ENST00000564693 1156 ntBASIC16.64■□□□□ 0.25
TPM1P09493 AC025048.3-201ENST00000590609 569 ntBASIC16.64■□□□□ 0.25
TPM1P09493 AC005702.4-201ENST00000618393 416 ntBASIC16.64■□□□□ 0.25
TPM1P09493 NME4-212ENST00000621774 904 ntTSL 3 BASIC16.64■□□□□ 0.25
TPM1P09493 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TPM1P09493 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC16.64■□□□□ 0.25
TPM1P09493 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC16.64■□□□□ 0.25
TPM1P09493 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
TPM1P09493 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
TPM1P09493 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TPM1P09493 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC16.64■□□□□ 0.25
TPM1P09493 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TPM1P09493 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TPM1P09493 FES-203ENST00000394302 2133 ntTSL 5 BASIC16.64■□□□□ 0.25
TPM1P09493 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TPM1P09493 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
TPM1P09493 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
TPM1P09493 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TPM1P09493 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
TPM1P09493 SMARCA4-202ENST00000413806 5512 ntTSL 5 BASIC16.64■□□□□ 0.25
TPM1P09493 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC16.64■□□□□ 0.25
TPM1P09493 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC16.64■□□□□ 0.25
TPM1P09493 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
TPM1P09493 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
TPM1P09493 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC16.63■□□□□ 0.25
TPM1P09493 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TPM1P09493 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
TPM1P09493 SYNPO-205ENST00000522122 5098 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
TPM1P09493 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC16.63■□□□□ 0.25
TPM1P09493 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TPM1P09493 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TPM1P09493 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
TPM1P09493 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TPM1P09493 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
TPM1P09493 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC16.63■□□□□ 0.25
TPM1P09493 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC16.63■□□□□ 0.25
TPM1P09493 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
TPM1P09493 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
TPM1P09493 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TPM1P09493 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC16.63■□□□□ 0.25
TPM1P09493 CYP20A1-201ENST00000356079 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TPM1P09493 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
TPM1P09493 GUF1-201ENST00000281543 4449 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TPM1P09493 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TPM1P09493 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TPM1P09493 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TPM1P09493 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
TPM1P09493 SPDYE7P-202ENST00000420373 878 ntBASIC16.63■□□□□ 0.25
TPM1P09493 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC16.63■□□□□ 0.25
TPM1P09493 KRT18P58-201ENST00000527480 1120 ntBASIC16.63■□□□□ 0.25
TPM1P09493 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC16.63■□□□□ 0.25
TPM1P09493 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC16.63■□□□□ 0.25
TPM1P09493 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC16.63■□□□□ 0.25
TPM1P09493 AC005829.1-201ENST00000570002 483 ntBASIC16.63■□□□□ 0.25
TPM1P09493 MIR4453-201ENST00000584019 89 ntBASIC16.63■□□□□ 0.25
TPM1P09493 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC16.63■□□□□ 0.25
TPM1P09493 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TPM1P09493 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC16.63■□□□□ 0.25
TPM1P09493 AL513210.1-201ENST00000629608 234 ntBASIC16.63■□□□□ 0.25
TPM1P09493 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TPM1P09493 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
TPM1P09493 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TPM1P09493 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TPM1P09493 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms