Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 RNU1-114P-201ENST00000365297 166 ntBASIC14.72□□□□□ -0.05
SIX3O95343 AL139094.1-201ENST00000405549 1188 ntBASIC14.72□□□□□ -0.05
SIX3O95343 MEP1AP4-201ENST00000423244 1087 ntBASIC14.72□□□□□ -0.05
SIX3O95343 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC14.72□□□□□ -0.05
SIX3O95343 AC134915.1-201ENST00000426461 574 ntBASIC14.72□□□□□ -0.05
SIX3O95343 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC14.72□□□□□ -0.05
SIX3O95343 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC14.72□□□□□ -0.05
SIX3O95343 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC14.72□□□□□ -0.05
SIX3O95343 AP001582.1-201ENST00000525856 295 ntBASIC14.72□□□□□ -0.05
SIX3O95343 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC14.72□□□□□ -0.05
SIX3O95343 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC14.72□□□□□ -0.05
SIX3O95343 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC14.72□□□□□ -0.05
SIX3O95343 AQP6-203ENST00000551733 849 ntTSL 3 BASIC14.72□□□□□ -0.05
SIX3O95343 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC14.72□□□□□ -0.05
SIX3O95343 RPS15-202ENST00000585665 467 ntTSL 3 BASIC14.72□□□□□ -0.05
SIX3O95343 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC14.72□□□□□ -0.05
SIX3O95343 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC14.72□□□□□ -0.05
SIX3O95343 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC14.72□□□□□ -0.05
SIX3O95343 AC007431.3-201ENST00000623221 587 ntBASIC14.72□□□□□ -0.05
SIX3O95343 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SIX3O95343 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
SIX3O95343 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SIX3O95343 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
SIX3O95343 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SIX3O95343 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC14.72□□□□□ -0.05
SIX3O95343 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SIX3O95343 ST20-AS1-201ENST00000560255 4223 ntBASIC14.72□□□□□ -0.05
SIX3O95343 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC14.72□□□□□ -0.05
SIX3O95343 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
SIX3O95343 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SIX3O95343 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SIX3O95343 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SIX3O95343 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SIX3O95343 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SIX3O95343 SLC7A15P-201ENST00000424028 1363 ntBASIC14.72□□□□□ -0.05
SIX3O95343 TDG-209ENST00000544861 1387 ntTSL 2 BASIC14.72□□□□□ -0.05
SIX3O95343 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
SIX3O95343 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC14.71□□□□□ -0.05
SIX3O95343 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
SIX3O95343 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC14.71□□□□□ -0.05
SIX3O95343 KCP-203ENST00000610776 5108 ntTSL 5 BASIC14.71□□□□□ -0.05
SIX3O95343 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SIX3O95343 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC14.71□□□□□ -0.05
SIX3O95343 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
SIX3O95343 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SIX3O95343 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC14.71□□□□□ -0.05
SIX3O95343 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SIX3O95343 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SIX3O95343 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SIX3O95343 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SIX3O95343 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SIX3O95343 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
SIX3O95343 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SIX3O95343 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
SIX3O95343 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
SIX3O95343 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC14.71□□□□□ -0.05
SIX3O95343 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SIX3O95343 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
SIX3O95343 TEX30-203ENST00000376022 828 ntTSL 2 BASIC14.71□□□□□ -0.05
SIX3O95343 BRF1-202ENST00000379932 884 ntTSL 5 BASIC14.71□□□□□ -0.05
SIX3O95343 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
SIX3O95343 C1QBPP1-201ENST00000400117 770 ntBASIC14.71□□□□□ -0.05
SIX3O95343 AC098850.1-201ENST00000419919 790 ntBASIC14.71□□□□□ -0.05
SIX3O95343 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC14.71□□□□□ -0.05
SIX3O95343 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
SIX3O95343 AC093004.1-201ENST00000508850 424 ntBASIC14.71□□□□□ -0.05
SIX3O95343 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC14.71□□□□□ -0.05
SIX3O95343 AC055876.2-201ENST00000531834 546 ntBASIC14.71□□□□□ -0.05
SIX3O95343 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC14.71□□□□□ -0.05
SIX3O95343 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC14.71□□□□□ -0.05
SIX3O95343 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SIX3O95343 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC14.71□□□□□ -0.05
SIX3O95343 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC14.71□□□□□ -0.05
SIX3O95343 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SIX3O95343 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SIX3O95343 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC14.71□□□□□ -0.05
SIX3O95343 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
SIX3O95343 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
SIX3O95343 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SIX3O95343 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
SIX3O95343 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SIX3O95343 AC152010.1-201ENST00000415779 2006 ntBASIC14.71□□□□□ -0.05
SIX3O95343 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SIX3O95343 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
SIX3O95343 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC14.71□□□□□ -0.06
SIX3O95343 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
SIX3O95343 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
SIX3O95343 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
SIX3O95343 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC14.71□□□□□ -0.06
SIX3O95343 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.06
SIX3O95343 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
SIX3O95343 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SIX3O95343 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
SIX3O95343 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
SIX3O95343 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC14.7□□□□□ -0.06
SIX3O95343 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC14.7□□□□□ -0.06
SIX3O95343 AC055811.4-201ENST00000624039 1754 ntBASIC14.7□□□□□ -0.06
SIX3O95343 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC14.7□□□□□ -0.06
SIX3O95343 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC14.7□□□□□ -0.06
SIX3O95343 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 248.3 ms