Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
CACNA1FO60840 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC18.5■□□□□ 0.55
CACNA1FO60840 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC18.5■□□□□ 0.55
CACNA1FO60840 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC18.5■□□□□ 0.55
CACNA1FO60840 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CACNA1FO60840 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CACNA1FO60840 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CACNA1FO60840 MIR769-201ENST00000390225 118 ntBASIC18.5■□□□□ 0.55
CACNA1FO60840 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CACNA1FO60840 AC007274.2-201ENST00000421675 662 ntBASIC18.5■□□□□ 0.55
CACNA1FO60840 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC18.5■□□□□ 0.55
CACNA1FO60840 ADM-202ENST00000524948 584 ntTSL 2 BASIC18.5■□□□□ 0.55
CACNA1FO60840 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CACNA1FO60840 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC18.5■□□□□ 0.55
CACNA1FO60840 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC18.5■□□□□ 0.55
CACNA1FO60840 RN7SL774P-201ENST00000577467 290 ntBASIC18.5■□□□□ 0.55
CACNA1FO60840 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CACNA1FO60840 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
CACNA1FO60840 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
CACNA1FO60840 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CACNA1FO60840 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC18.5■□□□□ 0.55
CACNA1FO60840 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CACNA1FO60840 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CACNA1FO60840 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC18.5■□□□□ 0.55
CACNA1FO60840 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC18.5■□□□□ 0.55
CACNA1FO60840 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC18.5■□□□□ 0.55
CACNA1FO60840 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC18.5■□□□□ 0.55
CACNA1FO60840 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
CACNA1FO60840 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC18.5■□□□□ 0.55
CACNA1FO60840 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC18.5■□□□□ 0.55
CACNA1FO60840 AC005586.2-201ENST00000563946 837 ntBASIC18.5■□□□□ 0.55
CACNA1FO60840 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC18.5■□□□□ 0.55
CACNA1FO60840 PAM16-211ENST00000575848 518 ntTSL 3 BASIC18.5■□□□□ 0.55
CACNA1FO60840 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
CACNA1FO60840 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
CACNA1FO60840 KRT8P31-201ENST00000504812 1408 ntBASIC18.5■□□□□ 0.55
CACNA1FO60840 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
CACNA1FO60840 AC020910.6-201ENST00000623084 1459 ntBASIC18.49■□□□□ 0.55
CACNA1FO60840 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CACNA1FO60840 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CACNA1FO60840 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC18.49■□□□□ 0.55
CACNA1FO60840 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
CACNA1FO60840 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
CACNA1FO60840 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
CACNA1FO60840 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CACNA1FO60840 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC18.49■□□□□ 0.55
CACNA1FO60840 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CACNA1FO60840 USP17L6P-201ENST00000382470 1197 ntBASIC18.49■□□□□ 0.55
CACNA1FO60840 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC18.49■□□□□ 0.55
CACNA1FO60840 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC18.49■□□□□ 0.55
CACNA1FO60840 NEU3-202ENST00000526068 431 ntTSL 2 BASIC18.49■□□□□ 0.55
CACNA1FO60840 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CACNA1FO60840 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
CACNA1FO60840 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
CACNA1FO60840 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC18.49■□□□□ 0.55
CACNA1FO60840 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC18.49■□□□□ 0.55
CACNA1FO60840 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC18.49■□□□□ 0.55
CACNA1FO60840 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CACNA1FO60840 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CACNA1FO60840 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CACNA1FO60840 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CACNA1FO60840 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
CACNA1FO60840 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC18.49■□□□□ 0.55
CACNA1FO60840 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
CACNA1FO60840 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CACNA1FO60840 BCL2-203ENST00000589955 5011 ntBASIC18.49■□□□□ 0.55
CACNA1FO60840 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
CACNA1FO60840 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC18.48■□□□□ 0.55
CACNA1FO60840 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC18.48■□□□□ 0.55
CACNA1FO60840 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CACNA1FO60840 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CACNA1FO60840 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC18.48■□□□□ 0.55
CACNA1FO60840 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CACNA1FO60840 ACTG1P2-201ENST00000415776 1125 ntBASIC18.48■□□□□ 0.55
CACNA1FO60840 ACTG1P11-201ENST00000425411 1125 ntBASIC18.48■□□□□ 0.55
CACNA1FO60840 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC18.48■□□□□ 0.55
CACNA1FO60840 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CACNA1FO60840 AC140658.4-201ENST00000561990 352 ntBASIC18.48■□□□□ 0.55
CACNA1FO60840 STUB1-204ENST00000564370 875 ntTSL 2 BASIC18.48■□□□□ 0.55
CACNA1FO60840 AF254983.2-201ENST00000612331 135 ntBASIC18.48■□□□□ 0.55
CACNA1FO60840 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC18.48■□□□□ 0.55
CACNA1FO60840 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC18.48■□□□□ 0.55
CACNA1FO60840 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC18.48■□□□□ 0.55
CACNA1FO60840 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC18.48■□□□□ 0.55
CACNA1FO60840 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
CACNA1FO60840 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
CACNA1FO60840 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CACNA1FO60840 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CACNA1FO60840 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CACNA1FO60840 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CACNA1FO60840 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CACNA1FO60840 LAP3P2-201ENST00000454686 1454 ntBASIC18.48■□□□□ 0.55
CACNA1FO60840 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC18.48■□□□□ 0.55
CACNA1FO60840 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CACNA1FO60840 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
CACNA1FO60840 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CACNA1FO60840 TSACC-208ENST00000481479 741 ntTSL 2 BASIC18.48■□□□□ 0.55
CACNA1FO60840 HPN-206ENST00000597419 1212 ntTSL 5 BASIC18.48■□□□□ 0.55
CACNA1FO60840 AC021016.3-201ENST00000608367 477 ntBASIC18.48■□□□□ 0.55
CACNA1FO60840 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms