Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
SDCBPO00560 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
SDCBPO00560 HNRNPA3P1-201ENST00000401429 1139 ntBASIC12.87□□□□□ -0.35
SDCBPO00560 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC12.87□□□□□ -0.35
SDCBPO00560 METTL21AP1-201ENST00000438852 635 ntBASIC12.87□□□□□ -0.35
SDCBPO00560 HNRNPA3P5-201ENST00000455201 833 ntBASIC12.87□□□□□ -0.35
SDCBPO00560 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC12.87□□□□□ -0.35
SDCBPO00560 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC12.87□□□□□ -0.35
SDCBPO00560 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
SDCBPO00560 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC12.87□□□□□ -0.35
SDCBPO00560 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
SDCBPO00560 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC12.87□□□□□ -0.35
SDCBPO00560 AC010336.2-201ENST00000564226 506 ntBASIC12.87□□□□□ -0.35
SDCBPO00560 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC12.87□□□□□ -0.35
SDCBPO00560 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC12.87□□□□□ -0.35
SDCBPO00560 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
SDCBPO00560 AC015911.4-201ENST00000588022 1070 ntBASIC12.87□□□□□ -0.35
SDCBPO00560 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC12.87□□□□□ -0.35
SDCBPO00560 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC12.87□□□□□ -0.35
SDCBPO00560 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
SDCBPO00560 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
SDCBPO00560 BEND3P1-201ENST00000421591 1944 ntBASIC12.87□□□□□ -0.35
SDCBPO00560 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC12.87□□□□□ -0.35
SDCBPO00560 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC12.87□□□□□ -0.35
SDCBPO00560 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
SDCBPO00560 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
SDCBPO00560 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC12.87□□□□□ -0.35
SDCBPO00560 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC12.87□□□□□ -0.35
SDCBPO00560 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
SDCBPO00560 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
SDCBPO00560 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC12.87□□□□□ -0.35
SDCBPO00560 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
SDCBPO00560 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
SDCBPO00560 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
SDCBPO00560 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC12.86□□□□□ -0.35
SDCBPO00560 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
SDCBPO00560 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
SDCBPO00560 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
SDCBPO00560 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
SDCBPO00560 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC12.86□□□□□ -0.35
SDCBPO00560 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC12.86□□□□□ -0.35
SDCBPO00560 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
SDCBPO00560 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC12.86□□□□□ -0.35
SDCBPO00560 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
SDCBPO00560 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
SDCBPO00560 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC12.86□□□□□ -0.35
SDCBPO00560 AC007787.1-201ENST00000588095 1583 ntBASIC12.86□□□□□ -0.35
SDCBPO00560 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
SDCBPO00560 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
SDCBPO00560 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
SDCBPO00560 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
SDCBPO00560 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
SDCBPO00560 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
SDCBPO00560 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
SDCBPO00560 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
SDCBPO00560 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC12.86□□□□□ -0.35
SDCBPO00560 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
SDCBPO00560 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
SDCBPO00560 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC12.86□□□□□ -0.35
SDCBPO00560 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
SDCBPO00560 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
SDCBPO00560 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC12.86□□□□□ -0.35
SDCBPO00560 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
SDCBPO00560 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
SDCBPO00560 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
SDCBPO00560 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
SDCBPO00560 SYS1-203ENST00000414310 795 ntTSL 3 BASIC12.86□□□□□ -0.35
SDCBPO00560 AC015922.1-201ENST00000421102 1152 ntBASIC12.86□□□□□ -0.35
SDCBPO00560 TREML5P-201ENST00000421694 576 ntBASIC12.86□□□□□ -0.35
SDCBPO00560 PFN2-205ENST00000461868 613 ntTSL 2 BASIC12.86□□□□□ -0.35
SDCBPO00560 SDHAP3-202ENST00000515467 728 ntBASIC12.86□□□□□ -0.35
SDCBPO00560 LY6E-204ENST00000519546 971 ntTSL 2 BASIC12.86□□□□□ -0.35
SDCBPO00560 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC12.86□□□□□ -0.35
SDCBPO00560 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
SDCBPO00560 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC12.86□□□□□ -0.35
SDCBPO00560 AC015910.1-201ENST00000579400 975 ntBASIC12.86□□□□□ -0.35
SDCBPO00560 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
SDCBPO00560 UBL5-208ENST00000593087 320 ntTSL 3 BASIC12.86□□□□□ -0.35
SDCBPO00560 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC12.86□□□□□ -0.35
SDCBPO00560 LINC01115-203ENST00000606068 577 ntBASIC12.86□□□□□ -0.35
SDCBPO00560 AL158211.3-201ENST00000607385 239 ntBASIC12.86□□□□□ -0.35
SDCBPO00560 AC139530.3-201ENST00000620344 690 ntBASIC12.86□□□□□ -0.35
SDCBPO00560 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
SDCBPO00560 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC12.86□□□□□ -0.35
SDCBPO00560 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC12.86□□□□□ -0.35
SDCBPO00560 AL109936.8-201ENST00000641772 604 ntBASIC12.86□□□□□ -0.35
SDCBPO00560 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
SDCBPO00560 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
SDCBPO00560 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
SDCBPO00560 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
SDCBPO00560 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC12.86□□□□□ -0.35
SDCBPO00560 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
SDCBPO00560 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
SDCBPO00560 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
SDCBPO00560 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
SDCBPO00560 DEK-201ENST00000244776 1441 ntTSL 2 BASIC12.86□□□□□ -0.35
SDCBPO00560 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC12.86□□□□□ -0.35
SDCBPO00560 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
SDCBPO00560 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC12.86□□□□□ -0.35
SDCBPO00560 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms