Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
FOXN3O00409 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
FOXN3O00409 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
FOXN3O00409 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
FOXN3O00409 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
FOXN3O00409 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC16.08■□□□□ 0.16
FOXN3O00409 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
FOXN3O00409 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
FOXN3O00409 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
FOXN3O00409 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC16.08■□□□□ 0.16
FOXN3O00409 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
FOXN3O00409 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
FOXN3O00409 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
FOXN3O00409 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
FOXN3O00409 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC16.07■□□□□ 0.16
FOXN3O00409 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
FOXN3O00409 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
FOXN3O00409 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC16.07■□□□□ 0.16
FOXN3O00409 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC16.07■□□□□ 0.16
FOXN3O00409 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
FOXN3O00409 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
FOXN3O00409 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
FOXN3O00409 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
FOXN3O00409 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
FOXN3O00409 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
FOXN3O00409 BAATP1-201ENST00000412284 1225 ntBASIC16.07■□□□□ 0.16
FOXN3O00409 TPT1P11-201ENST00000458482 498 ntBASIC16.07■□□□□ 0.16
FOXN3O00409 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
FOXN3O00409 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC16.07■□□□□ 0.16
FOXN3O00409 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
FOXN3O00409 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC16.07■□□□□ 0.16
FOXN3O00409 AC092364.2-202ENST00000597012 1073 ntBASIC16.07■□□□□ 0.16
FOXN3O00409 AC145423.3-201ENST00000615987 467 ntBASIC16.07■□□□□ 0.16
FOXN3O00409 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
FOXN3O00409 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
FOXN3O00409 AC134312.5-201ENST00000568031 1313 ntBASIC16.07■□□□□ 0.16
FOXN3O00409 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
FOXN3O00409 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
FOXN3O00409 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC16.07■□□□□ 0.16
FOXN3O00409 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC16.07■□□□□ 0.16
FOXN3O00409 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
FOXN3O00409 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
FOXN3O00409 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
FOXN3O00409 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
FOXN3O00409 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC16.07■□□□□ 0.16
FOXN3O00409 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC16.07■□□□□ 0.16
FOXN3O00409 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
FOXN3O00409 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
FOXN3O00409 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
FOXN3O00409 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
FOXN3O00409 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
FOXN3O00409 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
FOXN3O00409 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
FOXN3O00409 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
FOXN3O00409 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
FOXN3O00409 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
FOXN3O00409 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
FOXN3O00409 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
FOXN3O00409 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC16.06■□□□□ 0.16
FOXN3O00409 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC16.06■□□□□ 0.16
FOXN3O00409 AGGF1P1-201ENST00000509500 2073 ntBASIC16.06■□□□□ 0.16
FOXN3O00409 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
FOXN3O00409 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC16.06■□□□□ 0.16
FOXN3O00409 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
FOXN3O00409 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
FOXN3O00409 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
FOXN3O00409 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
FOXN3O00409 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
FOXN3O00409 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
FOXN3O00409 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
FOXN3O00409 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
FOXN3O00409 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC16.06■□□□□ 0.16
FOXN3O00409 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC16.06■□□□□ 0.16
FOXN3O00409 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
FOXN3O00409 AC007969.1-201ENST00000433675 447 ntBASIC16.06■□□□□ 0.16
FOXN3O00409 AC012441.1-201ENST00000446669 685 ntBASIC16.06■□□□□ 0.16
FOXN3O00409 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
FOXN3O00409 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC16.06■□□□□ 0.16
FOXN3O00409 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC16.06■□□□□ 0.16
FOXN3O00409 AC010319.3-201ENST00000597028 470 ntBASIC16.06■□□□□ 0.16
FOXN3O00409 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC16.06■□□□□ 0.16
FOXN3O00409 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
FOXN3O00409 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC16.06■□□□□ 0.16
FOXN3O00409 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC16.06■□□□□ 0.16
FOXN3O00409 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
FOXN3O00409 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
FOXN3O00409 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
FOXN3O00409 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
FOXN3O00409 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
FOXN3O00409 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
FOXN3O00409 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
FOXN3O00409 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
FOXN3O00409 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
FOXN3O00409 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
FOXN3O00409 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
FOXN3O00409 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
FOXN3O00409 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC16.05■□□□□ 0.16
FOXN3O00409 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC16.05■□□□□ 0.16
FOXN3O00409 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
FOXN3O00409 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms