Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 RPS23-207ENST00000511844 530 ntTSL 2 BASIC11.36□□□□□ -0.59
COL6A5A8TX70 C11orf58-207ENST00000525684 575 ntTSL 2 BASIC11.36□□□□□ -0.59
COL6A5A8TX70 C11orf58-209ENST00000528634 776 ntTSL 5 BASIC11.36□□□□□ -0.59
COL6A5A8TX70 BID-209ENST00000551952 700 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
COL6A5A8TX70 CES1P2-201ENST00000566467 1242 ntBASIC11.36□□□□□ -0.59
COL6A5A8TX70 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC11.36□□□□□ -0.59
COL6A5A8TX70 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC11.36□□□□□ -0.59
COL6A5A8TX70 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
COL6A5A8TX70 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
COL6A5A8TX70 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
COL6A5A8TX70 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC11.36□□□□□ -0.59
COL6A5A8TX70 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC11.36□□□□□ -0.59
COL6A5A8TX70 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
COL6A5A8TX70 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
COL6A5A8TX70 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC11.36□□□□□ -0.59
COL6A5A8TX70 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC11.36□□□□□ -0.59
COL6A5A8TX70 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
COL6A5A8TX70 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
COL6A5A8TX70 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
COL6A5A8TX70 GATB-213ENST00000515812 1893 ntTSL 5 BASIC11.36□□□□□ -0.59
COL6A5A8TX70 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
COL6A5A8TX70 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
COL6A5A8TX70 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC11.36□□□□□ -0.59
COL6A5A8TX70 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
COL6A5A8TX70 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
COL6A5A8TX70 AC005332.8-201ENST00000622750 2735 ntBASIC11.36□□□□□ -0.59
COL6A5A8TX70 S100B-201ENST00000291700 877 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
COL6A5A8TX70 RN7SL672P-201ENST00000474091 317 ntBASIC11.36□□□□□ -0.59
COL6A5A8TX70 MST1L-204ENST00000545160 559 ntTSL 4 BASIC11.36□□□□□ -0.59
COL6A5A8TX70 MIR4746-201ENST00000579802 71 ntBASIC11.36□□□□□ -0.59
COL6A5A8TX70 AL135936.1-201ENST00000617956 998 ntTSL 5 BASIC11.36□□□□□ -0.59
COL6A5A8TX70 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
COL6A5A8TX70 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
COL6A5A8TX70 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
COL6A5A8TX70 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC11.36□□□□□ -0.59
COL6A5A8TX70 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
COL6A5A8TX70 LINC00682-202ENST00000499082 1384 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
COL6A5A8TX70 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC11.35□□□□□ -0.59
COL6A5A8TX70 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
COL6A5A8TX70 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC11.35□□□□□ -0.59
COL6A5A8TX70 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC11.35□□□□□ -0.59
COL6A5A8TX70 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
COL6A5A8TX70 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
COL6A5A8TX70 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
COL6A5A8TX70 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
COL6A5A8TX70 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC11.35□□□□□ -0.59
COL6A5A8TX70 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC11.35□□□□□ -0.59
COL6A5A8TX70 NAT8B-201ENST00000377712 765 ntAPPRIS P1 BASIC11.35□□□□□ -0.59
COL6A5A8TX70 TOMM5-203ENST00000401811 789 ntTSL 2 BASIC11.35□□□□□ -0.59
COL6A5A8TX70 MIR1226-201ENST00000408658 75 ntBASIC11.35□□□□□ -0.59
COL6A5A8TX70 CELP-201ENST00000411440 1249 ntTSL 5 BASIC11.35□□□□□ -0.59
COL6A5A8TX70 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC11.35□□□□□ -0.59
COL6A5A8TX70 AP001057.1-201ENST00000437557 799 ntTSL 5 BASIC11.35□□□□□ -0.59
COL6A5A8TX70 TMEM14B-208ENST00000467317 1224 ntTSL 2 BASIC11.35□□□□□ -0.59
COL6A5A8TX70 RN7SL767P-201ENST00000493013 295 ntBASIC11.35□□□□□ -0.59
COL6A5A8TX70 SMIM15-202ENST00000507416 584 ntAPPRIS P1 TSL 2 BASIC11.35□□□□□ -0.59
COL6A5A8TX70 HINT1-205ENST00000508488 703 ntTSL 2 BASIC11.35□□□□□ -0.59
COL6A5A8TX70 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC11.35□□□□□ -0.59
COL6A5A8TX70 ABCC6P1-203ENST00000565566 1170 ntBASIC11.35□□□□□ -0.59
COL6A5A8TX70 DERL2-206ENST00000572834 589 ntTSL 3 BASIC11.35□□□□□ -0.59
COL6A5A8TX70 AC106782.5-201ENST00000616011 337 ntBASIC11.35□□□□□ -0.59
COL6A5A8TX70 PNPT1-207ENST00000625249 216 ntTSL 5 BASIC11.35□□□□□ -0.59
COL6A5A8TX70 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
COL6A5A8TX70 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
COL6A5A8TX70 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
COL6A5A8TX70 CFAP20-201ENST00000262498 1354 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
COL6A5A8TX70 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC11.35□□□□□ -0.59
COL6A5A8TX70 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC11.35□□□□□ -0.59
COL6A5A8TX70 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC11.35□□□□□ -0.59
COL6A5A8TX70 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC11.35□□□□□ -0.59
COL6A5A8TX70 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
COL6A5A8TX70 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
COL6A5A8TX70 GPN3-203ENST00000543199 1604 ntTSL 5 BASIC11.35□□□□□ -0.59
COL6A5A8TX70 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
COL6A5A8TX70 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
COL6A5A8TX70 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
COL6A5A8TX70 AC127383.1-201ENST00000444697 1800 ntBASIC11.35□□□□□ -0.59
COL6A5A8TX70 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
COL6A5A8TX70 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
COL6A5A8TX70 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
COL6A5A8TX70 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
COL6A5A8TX70 KRT18P44-201ENST00000416086 1285 ntBASIC11.35□□□□□ -0.59
COL6A5A8TX70 AL359092.2-201ENST00000423330 585 ntBASIC11.35□□□□□ -0.59
COL6A5A8TX70 IP6K2-223ENST00000453202 571 ntTSL 4 BASIC11.35□□□□□ -0.59
COL6A5A8TX70 AC092910.2-201ENST00000491262 348 ntBASIC11.35□□□□□ -0.59
COL6A5A8TX70 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC11.35□□□□□ -0.59
COL6A5A8TX70 BMF-206ENST00000558774 671 ntTSL 3 BASIC11.35□□□□□ -0.59
COL6A5A8TX70 SHBG-217ENST00000576478 639 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
COL6A5A8TX70 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
COL6A5A8TX70 AC068880.1-201ENST00000507289 2297 ntBASIC11.35□□□□□ -0.59
COL6A5A8TX70 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
COL6A5A8TX70 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
COL6A5A8TX70 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
COL6A5A8TX70 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC11.34□□□□□ -0.59
COL6A5A8TX70 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
COL6A5A8TX70 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
COL6A5A8TX70 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC11.34□□□□□ -0.59
COL6A5A8TX70 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
COL6A5A8TX70 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
COL6A5A8TX70 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms