Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 HLA-DQB1-202ENST00000399079 1501 ntBASIC18.8■□□□□ 0.6
SCN11AQ9UI33 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SCN11AQ9UI33 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
SCN11AQ9UI33 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC18.8■□□□□ 0.6
SCN11AQ9UI33 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
SCN11AQ9UI33 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC18.8■□□□□ 0.6
SCN11AQ9UI33 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SCN11AQ9UI33 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC18.79■□□□□ 0.6
SCN11AQ9UI33 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC18.79■□□□□ 0.6
SCN11AQ9UI33 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
SCN11AQ9UI33 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC18.79■□□□□ 0.6
SCN11AQ9UI33 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC18.79■□□□□ 0.6
SCN11AQ9UI33 BRD7P5-201ENST00000299197 1822 ntBASIC18.79■□□□□ 0.6
SCN11AQ9UI33 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SCN11AQ9UI33 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SCN11AQ9UI33 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SCN11AQ9UI33 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC18.79■□□□□ 0.6
SCN11AQ9UI33 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
SCN11AQ9UI33 LINC01815-202ENST00000641468 1409 ntBASIC18.79■□□□□ 0.6
SCN11AQ9UI33 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
SCN11AQ9UI33 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
SCN11AQ9UI33 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
SCN11AQ9UI33 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC18.79■□□□□ 0.6
SCN11AQ9UI33 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC18.79■□□□□ 0.6
SCN11AQ9UI33 AC079112.1-201ENST00000454972 939 ntBASIC18.79■□□□□ 0.6
SCN11AQ9UI33 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC18.79■□□□□ 0.6
SCN11AQ9UI33 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SCN11AQ9UI33 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC18.79■□□□□ 0.6
SCN11AQ9UI33 GMFG-209ENST00000600322 622 ntTSL 5 BASIC18.79■□□□□ 0.6
SCN11AQ9UI33 AC009560.1-201ENST00000620208 434 ntBASIC18.79■□□□□ 0.6
SCN11AQ9UI33 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
SCN11AQ9UI33 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SCN11AQ9UI33 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SCN11AQ9UI33 AC090502.4-201ENST00000551714 1386 ntBASIC18.79■□□□□ 0.6
SCN11AQ9UI33 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SCN11AQ9UI33 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC18.79■□□□□ 0.6
SCN11AQ9UI33 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC18.79■□□□□ 0.6
SCN11AQ9UI33 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
SCN11AQ9UI33 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SCN11AQ9UI33 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SCN11AQ9UI33 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SCN11AQ9UI33 GPI-205ENST00000586425 1799 ntTSL 5 BASIC18.79■□□□□ 0.6
SCN11AQ9UI33 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SCN11AQ9UI33 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC18.79■□□□□ 0.6
SCN11AQ9UI33 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC18.79■□□□□ 0.6
SCN11AQ9UI33 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SCN11AQ9UI33 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC18.78■□□□□ 0.6
SCN11AQ9UI33 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
SCN11AQ9UI33 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SCN11AQ9UI33 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
SCN11AQ9UI33 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC18.78■□□□□ 0.6
SCN11AQ9UI33 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC18.78■□□□□ 0.6
SCN11AQ9UI33 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SCN11AQ9UI33 SORD2P-201ENST00000558556 1069 ntBASIC18.78■□□□□ 0.6
SCN11AQ9UI33 MIR2392-201ENST00000584881 84 ntBASIC18.78■□□□□ 0.6
SCN11AQ9UI33 AL591471.1-201ENST00000621855 229 ntBASIC18.78■□□□□ 0.6
SCN11AQ9UI33 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SCN11AQ9UI33 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
SCN11AQ9UI33 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC18.78■□□□□ 0.6
SCN11AQ9UI33 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SCN11AQ9UI33 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SCN11AQ9UI33 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC18.78■□□□□ 0.6
SCN11AQ9UI33 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SCN11AQ9UI33 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC18.78■□□□□ 0.6
SCN11AQ9UI33 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
SCN11AQ9UI33 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SCN11AQ9UI33 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC18.78■□□□□ 0.6
SCN11AQ9UI33 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SCN11AQ9UI33 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC18.78■□□□□ 0.6
SCN11AQ9UI33 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC18.78■□□□□ 0.6
SCN11AQ9UI33 PAUPAR-201ENST00000630360 2965 ntBASIC18.78■□□□□ 0.6
SCN11AQ9UI33 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SCN11AQ9UI33 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
SCN11AQ9UI33 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
SCN11AQ9UI33 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
SCN11AQ9UI33 KRT17P5-201ENST00000332088 839 ntBASIC18.78■□□□□ 0.6
SCN11AQ9UI33 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SCN11AQ9UI33 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC18.78■□□□□ 0.6
SCN11AQ9UI33 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC18.78■□□□□ 0.6
SCN11AQ9UI33 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC18.78■□□□□ 0.6
SCN11AQ9UI33 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SCN11AQ9UI33 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SCN11AQ9UI33 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SCN11AQ9UI33 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
SCN11AQ9UI33 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC18.78■□□□□ 0.6
SCN11AQ9UI33 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SCN11AQ9UI33 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SCN11AQ9UI33 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC18.77■□□□□ 0.6
SCN11AQ9UI33 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC18.77■□□□□ 0.6
SCN11AQ9UI33 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SCN11AQ9UI33 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SCN11AQ9UI33 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC18.77■□□□□ 0.6
SCN11AQ9UI33 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC18.77■□□□□ 0.6
SCN11AQ9UI33 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SCN11AQ9UI33 IL9RP3-201ENST00000442856 1674 ntBASIC18.77■□□□□ 0.6
SCN11AQ9UI33 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
SCN11AQ9UI33 LAP3P2-201ENST00000454686 1454 ntBASIC18.77■□□□□ 0.6
SCN11AQ9UI33 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC18.77■□□□□ 0.6
SCN11AQ9UI33 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SCN11AQ9UI33 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 179.1 ms