Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 REXO1L2P-201ENST00000425429 2069 ntBASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 AC023157.3-201ENST00000619086 2088 ntBASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 TPM3P8-201ENST00000330554 643 ntBASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 MIR658-201ENST00000385210 100 ntBASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 SNX29P1-201ENST00000548357 1007 ntBASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 ENPP7P14-201ENST00000621765 1040 ntBASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 OR2I1P-210ENST00000642037 4691 ntBASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC14.97□□□□□ -0.01
TRIM39Q9HCM9 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM39Q9HCM9 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM39Q9HCM9 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC14.97□□□□□ -0.01
TRIM39Q9HCM9 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC14.97□□□□□ -0.01
TRIM39Q9HCM9 PARN-202ENST00000420015 2360 ntTSL 2 BASIC14.97□□□□□ -0.01
TRIM39Q9HCM9 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM39Q9HCM9 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM39Q9HCM9 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM39Q9HCM9 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM39Q9HCM9 ANKRD19P-201ENST00000338192 862 ntBASIC14.97□□□□□ -0.01
TRIM39Q9HCM9 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM39Q9HCM9 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
TRIM39Q9HCM9 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC14.97□□□□□ -0.01
TRIM39Q9HCM9 FAM197Y7-201ENST00000432892 766 ntBASIC14.97□□□□□ -0.01
TRIM39Q9HCM9 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC14.97□□□□□ -0.01
TRIM39Q9HCM9 AC079316.1-201ENST00000548397 411 ntBASIC14.97□□□□□ -0.01
TRIM39Q9HCM9 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM39Q9HCM9 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC14.97□□□□□ -0.01
TRIM39Q9HCM9 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM39Q9HCM9 AC133552.6-201ENST00000613406 534 ntBASIC14.97□□□□□ -0.01
TRIM39Q9HCM9 RHOXF1P1-202ENST00000635473 501 ntBASIC14.97□□□□□ -0.01
TRIM39Q9HCM9 COX11-210ENST00000639671 696 ntBASIC14.97□□□□□ -0.01
TRIM39Q9HCM9 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC14.97□□□□□ -0.01
TRIM39Q9HCM9 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM39Q9HCM9 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM39Q9HCM9 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM39Q9HCM9 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC14.97□□□□□ -0.01
TRIM39Q9HCM9 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC14.97□□□□□ -0.01
TRIM39Q9HCM9 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC14.97□□□□□ -0.01
TRIM39Q9HCM9 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM39Q9HCM9 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM39Q9HCM9 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM39Q9HCM9 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM39Q9HCM9 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM39Q9HCM9 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM39Q9HCM9 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC14.96□□□□□ -0.01
TRIM39Q9HCM9 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM39Q9HCM9 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM39Q9HCM9 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC14.96□□□□□ -0.01
TRIM39Q9HCM9 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC14.96□□□□□ -0.01
TRIM39Q9HCM9 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC14.96□□□□□ -0.01
TRIM39Q9HCM9 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM39Q9HCM9 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
TRIM39Q9HCM9 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
TRIM39Q9HCM9 AC006001.1-201ENST00000325130 474 ntBASIC14.96□□□□□ -0.01
TRIM39Q9HCM9 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM39Q9HCM9 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC14.96□□□□□ -0.01
TRIM39Q9HCM9 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC14.96□□□□□ -0.01
TRIM39Q9HCM9 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
TRIM39Q9HCM9 CD8B2-202ENST00000417670 633 ntBASIC14.96□□□□□ -0.01
TRIM39Q9HCM9 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC14.96□□□□□ -0.01
TRIM39Q9HCM9 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC14.96□□□□□ -0.01
TRIM39Q9HCM9 AC245100.3-201ENST00000441281 285 ntBASIC14.96□□□□□ -0.01
TRIM39Q9HCM9 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC14.96□□□□□ -0.01
TRIM39Q9HCM9 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC14.96□□□□□ -0.01
TRIM39Q9HCM9 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
TRIM39Q9HCM9 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC14.96□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 71.8 ms