Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
ERCC4Q92889 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
ERCC4Q92889 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC17.13■□□□□ 0.33
ERCC4Q92889 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ERCC4Q92889 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ERCC4Q92889 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC17.13■□□□□ 0.33
ERCC4Q92889 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC17.13■□□□□ 0.33
ERCC4Q92889 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC17.13■□□□□ 0.33
ERCC4Q92889 TSSK5P-201ENST00000423978 907 ntBASIC17.13■□□□□ 0.33
ERCC4Q92889 URGCP-206ENST00000446958 365 ntTSL 2 BASIC17.13■□□□□ 0.33
ERCC4Q92889 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC17.13■□□□□ 0.33
ERCC4Q92889 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC17.13■□□□□ 0.33
ERCC4Q92889 AC092183.1-201ENST00000469884 875 ntBASIC17.13■□□□□ 0.33
ERCC4Q92889 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC17.13■□□□□ 0.33
ERCC4Q92889 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC17.13■□□□□ 0.33
ERCC4Q92889 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
ERCC4Q92889 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
ERCC4Q92889 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC17.13■□□□□ 0.33
ERCC4Q92889 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC17.13■□□□□ 0.33
ERCC4Q92889 RPL28-205ENST00000558131 444 ntTSL 5 BASIC17.13■□□□□ 0.33
ERCC4Q92889 AC140878.1-201ENST00000565277 250 ntBASIC17.13■□□□□ 0.33
ERCC4Q92889 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
ERCC4Q92889 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
ERCC4Q92889 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC17.13■□□□□ 0.33
ERCC4Q92889 AL137783.1-201ENST00000623494 1896 ntBASIC17.13■□□□□ 0.33
ERCC4Q92889 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
ERCC4Q92889 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
ERCC4Q92889 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ERCC4Q92889 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC17.13■□□□□ 0.33
ERCC4Q92889 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
ERCC4Q92889 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ERCC4Q92889 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
ERCC4Q92889 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
ERCC4Q92889 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ERCC4Q92889 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC17.13■□□□□ 0.33
ERCC4Q92889 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC17.13■□□□□ 0.33
ERCC4Q92889 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ERCC4Q92889 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC17.13■□□□□ 0.33
ERCC4Q92889 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ERCC4Q92889 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC17.12■□□□□ 0.33
ERCC4Q92889 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
ERCC4Q92889 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC17.12■□□□□ 0.33
ERCC4Q92889 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ERCC4Q92889 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
ERCC4Q92889 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
ERCC4Q92889 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
ERCC4Q92889 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
ERCC4Q92889 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
ERCC4Q92889 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
ERCC4Q92889 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC17.12■□□□□ 0.33
ERCC4Q92889 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
ERCC4Q92889 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ERCC4Q92889 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
ERCC4Q92889 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
ERCC4Q92889 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
ERCC4Q92889 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ERCC4Q92889 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC17.12■□□□□ 0.33
ERCC4Q92889 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC17.12■□□□□ 0.33
ERCC4Q92889 DUX4L27-201ENST00000554796 1261 ntBASIC17.12■□□□□ 0.33
ERCC4Q92889 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
ERCC4Q92889 AC009407.1-201ENST00000568958 598 ntBASIC17.12■□□□□ 0.33
ERCC4Q92889 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC17.12■□□□□ 0.33
ERCC4Q92889 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ERCC4Q92889 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ERCC4Q92889 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC17.12■□□□□ 0.33
ERCC4Q92889 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
ERCC4Q92889 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
ERCC4Q92889 AC023090.2-201ENST00000625182 2110 ntBASIC17.12■□□□□ 0.33
ERCC4Q92889 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ERCC4Q92889 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ERCC4Q92889 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC17.12■□□□□ 0.33
ERCC4Q92889 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
ERCC4Q92889 AC136759.1-202ENST00000530858 2194 ntBASIC17.12■□□□□ 0.33
ERCC4Q92889 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC17.12■□□□□ 0.33
ERCC4Q92889 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ERCC4Q92889 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ERCC4Q92889 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
ERCC4Q92889 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
ERCC4Q92889 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
ERCC4Q92889 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
ERCC4Q92889 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ERCC4Q92889 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ERCC4Q92889 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC17.11■□□□□ 0.33
ERCC4Q92889 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
ERCC4Q92889 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
ERCC4Q92889 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
ERCC4Q92889 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ERCC4Q92889 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
ERCC4Q92889 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ERCC4Q92889 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ERCC4Q92889 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ERCC4Q92889 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC17.11■□□□□ 0.33
ERCC4Q92889 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ERCC4Q92889 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
ERCC4Q92889 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ERCC4Q92889 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ERCC4Q92889 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ERCC4Q92889 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ERCC4Q92889 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
ERCC4Q92889 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 57.3 ms