Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC19.36■□□□□ 0.69
USP54Q70EL1 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP54Q70EL1 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP54Q70EL1 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
USP54Q70EL1 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP54Q70EL1 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
USP54Q70EL1 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC19.36■□□□□ 0.69
USP54Q70EL1 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
USP54Q70EL1 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP54Q70EL1 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP54Q70EL1 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
USP54Q70EL1 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP54Q70EL1 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP54Q70EL1 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
USP54Q70EL1 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC19.35■□□□□ 0.69
USP54Q70EL1 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC19.35■□□□□ 0.69
USP54Q70EL1 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP54Q70EL1 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC19.35■□□□□ 0.69
USP54Q70EL1 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC19.35■□□□□ 0.69
USP54Q70EL1 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC19.35■□□□□ 0.69
USP54Q70EL1 EEF1DP2-201ENST00000433698 843 ntBASIC19.35■□□□□ 0.69
USP54Q70EL1 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC19.35■□□□□ 0.69
USP54Q70EL1 MAX-218ENST00000557746 571 ntTSL 4 BASIC19.35■□□□□ 0.69
USP54Q70EL1 DBP-202ENST00000593500 712 ntTSL 2 BASIC19.35■□□□□ 0.69
USP54Q70EL1 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC19.35■□□□□ 0.69
USP54Q70EL1 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC19.35■□□□□ 0.69
USP54Q70EL1 CYP51A1P3-201ENST00000400072 1428 ntBASIC19.35■□□□□ 0.69
USP54Q70EL1 ZEB1-AS1-208ENST00000607166 2503 ntBASIC19.35■□□□□ 0.69
USP54Q70EL1 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP54Q70EL1 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP54Q70EL1 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
USP54Q70EL1 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
USP54Q70EL1 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC19.35■□□□□ 0.69
USP54Q70EL1 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
USP54Q70EL1 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC19.35■□□□□ 0.69
USP54Q70EL1 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC19.34■□□□□ 0.69
USP54Q70EL1 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC19.34■□□□□ 0.69
USP54Q70EL1 CES3-203ENST00000543856 3178 ntTSL 2 BASIC19.34■□□□□ 0.69
USP54Q70EL1 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
USP54Q70EL1 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP54Q70EL1 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
USP54Q70EL1 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC19.34■□□□□ 0.69
USP54Q70EL1 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP54Q70EL1 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
USP54Q70EL1 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC19.34■□□□□ 0.69
USP54Q70EL1 AC092265.1-201ENST00000422638 498 ntTSL 2 BASIC19.34■□□□□ 0.69
USP54Q70EL1 PSMD4P1-201ENST00000433951 1109 ntBASIC19.34■□□□□ 0.69
USP54Q70EL1 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
USP54Q70EL1 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC19.34■□□□□ 0.69
USP54Q70EL1 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC19.34■□□□□ 0.69
USP54Q70EL1 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC19.34■□□□□ 0.69
USP54Q70EL1 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC19.34■□□□□ 0.69
USP54Q70EL1 KRT8P2-201ENST00000556193 944 ntBASIC19.34■□□□□ 0.69
USP54Q70EL1 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC19.34■□□□□ 0.69
USP54Q70EL1 AP000322.3-201ENST00000608665 388 ntBASIC19.34■□□□□ 0.69
USP54Q70EL1 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC19.34■□□□□ 0.69
USP54Q70EL1 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP54Q70EL1 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC19.34■□□□□ 0.69
USP54Q70EL1 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP54Q70EL1 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC19.34■□□□□ 0.69
USP54Q70EL1 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP54Q70EL1 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC19.34■□□□□ 0.69
USP54Q70EL1 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP54Q70EL1 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
USP54Q70EL1 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC19.34■□□□□ 0.69
USP54Q70EL1 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC19.34■□□□□ 0.69
USP54Q70EL1 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC19.34■□□□□ 0.69
USP54Q70EL1 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP54Q70EL1 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC19.34■□□□□ 0.69
USP54Q70EL1 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
USP54Q70EL1 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC19.34■□□□□ 0.69
USP54Q70EL1 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC19.34■□□□□ 0.69
USP54Q70EL1 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
USP54Q70EL1 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
USP54Q70EL1 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
USP54Q70EL1 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
USP54Q70EL1 STK16-203ENST00000409516 895 ntTSL 2 BASIC19.33■□□□□ 0.69
USP54Q70EL1 AL391839.2-201ENST00000412085 383 ntTSL 5 BASIC19.33■□□□□ 0.69
USP54Q70EL1 AL139008.1-201ENST00000437894 228 ntBASIC19.33■□□□□ 0.69
USP54Q70EL1 TPT1P11-201ENST00000458482 498 ntBASIC19.33■□□□□ 0.69
USP54Q70EL1 RN7SL470P-201ENST00000583069 259 ntBASIC19.33■□□□□ 0.69
USP54Q70EL1 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
USP54Q70EL1 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
USP54Q70EL1 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC19.33■□□□□ 0.69
USP54Q70EL1 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC19.33■□□□□ 0.69
USP54Q70EL1 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
USP54Q70EL1 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
USP54Q70EL1 AC019109.1-201ENST00000401725 1874 ntBASIC19.33■□□□□ 0.69
USP54Q70EL1 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
USP54Q70EL1 AC025183.3-201ENST00000623526 1482 ntBASIC19.33■□□□□ 0.69
USP54Q70EL1 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
USP54Q70EL1 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
USP54Q70EL1 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
USP54Q70EL1 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC19.33■□□□□ 0.69
USP54Q70EL1 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
USP54Q70EL1 TEKT4P2-202ENST00000559466 1312 ntBASIC19.33■□□□□ 0.68
USP54Q70EL1 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC19.33■□□□□ 0.68
USP54Q70EL1 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
USP54Q70EL1 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC19.33■□□□□ 0.68
USP54Q70EL1 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 98.9 ms