Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC17.76■□□□□ 0.43
SYNE3Q6ZMZ3 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
SYNE3Q6ZMZ3 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SYNE3Q6ZMZ3 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC17.76■□□□□ 0.43
SYNE3Q6ZMZ3 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
SYNE3Q6ZMZ3 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SYNE3Q6ZMZ3 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC17.76■□□□□ 0.43
SYNE3Q6ZMZ3 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SYNE3Q6ZMZ3 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
SYNE3Q6ZMZ3 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SYNE3Q6ZMZ3 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SYNE3Q6ZMZ3 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC17.76■□□□□ 0.43
SYNE3Q6ZMZ3 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SYNE3Q6ZMZ3 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SYNE3Q6ZMZ3 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
SYNE3Q6ZMZ3 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 NME2P1-201ENST00000426182 414 ntBASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 TTTY23B-201ENST00000442790 549 ntBASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 DUX4L47-201ENST00000566374 394 ntBASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 AC132938.2-201ENST00000579188 680 ntBASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 RPS15-202ENST00000585665 467 ntTSL 3 BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 AL591163.1-201ENST00000641757 987 ntBASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 AC055811.4-201ENST00000624039 1754 ntBASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
SYNE3Q6ZMZ3 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC17.74■□□□□ 0.43
SYNE3Q6ZMZ3 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SYNE3Q6ZMZ3 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SYNE3Q6ZMZ3 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SYNE3Q6ZMZ3 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SYNE3Q6ZMZ3 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SYNE3Q6ZMZ3 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
SYNE3Q6ZMZ3 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC17.74■□□□□ 0.43
SYNE3Q6ZMZ3 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
SYNE3Q6ZMZ3 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SYNE3Q6ZMZ3 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SYNE3Q6ZMZ3 FAM45BP-202ENST00000592932 1624 ntBASIC17.74■□□□□ 0.43
SYNE3Q6ZMZ3 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SYNE3Q6ZMZ3 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SYNE3Q6ZMZ3 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SYNE3Q6ZMZ3 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC17.74■□□□□ 0.43
SYNE3Q6ZMZ3 GRAP-202ENST00000395635 834 ntTSL 2 BASIC17.74■□□□□ 0.43
SYNE3Q6ZMZ3 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC17.74■□□□□ 0.43
SYNE3Q6ZMZ3 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC17.74■□□□□ 0.43
SYNE3Q6ZMZ3 COX5BP8-201ENST00000416911 349 ntBASIC17.74■□□□□ 0.43
SYNE3Q6ZMZ3 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SYNE3Q6ZMZ3 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SYNE3Q6ZMZ3 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC17.74■□□□□ 0.43
SYNE3Q6ZMZ3 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SYNE3Q6ZMZ3 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SYNE3Q6ZMZ3 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SYNE3Q6ZMZ3 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SYNE3Q6ZMZ3 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SYNE3Q6ZMZ3 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC17.74■□□□□ 0.43
SYNE3Q6ZMZ3 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SYNE3Q6ZMZ3 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC17.74■□□□□ 0.43
SYNE3Q6ZMZ3 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
SYNE3Q6ZMZ3 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms