Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RC3H1Q5TC82 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC18.54■□□□□ 0.56
RC3H1Q5TC82 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RC3H1Q5TC82 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC18.54■□□□□ 0.56
RC3H1Q5TC82 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC18.54■□□□□ 0.56
RC3H1Q5TC82 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC18.54■□□□□ 0.56
RC3H1Q5TC82 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RC3H1Q5TC82 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
RC3H1Q5TC82 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
RC3H1Q5TC82 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RC3H1Q5TC82 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
RC3H1Q5TC82 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RC3H1Q5TC82 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC18.54■□□□□ 0.56
RC3H1Q5TC82 PSMD4P1-201ENST00000433951 1109 ntBASIC18.54■□□□□ 0.56
RC3H1Q5TC82 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC18.54■□□□□ 0.56
RC3H1Q5TC82 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
RC3H1Q5TC82 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
RC3H1Q5TC82 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC18.54■□□□□ 0.56
RC3H1Q5TC82 AC007952.4-201ENST00000573866 637 ntBASIC18.54■□□□□ 0.56
RC3H1Q5TC82 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RC3H1Q5TC82 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC18.54■□□□□ 0.56
RC3H1Q5TC82 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RC3H1Q5TC82 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
RC3H1Q5TC82 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC18.54■□□□□ 0.56
RC3H1Q5TC82 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
RC3H1Q5TC82 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RC3H1Q5TC82 AC139712.1-201ENST00000378256 1875 ntBASIC18.54■□□□□ 0.56
RC3H1Q5TC82 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RC3H1Q5TC82 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
RC3H1Q5TC82 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RC3H1Q5TC82 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
RC3H1Q5TC82 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RC3H1Q5TC82 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC18.54■□□□□ 0.56
RC3H1Q5TC82 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
RC3H1Q5TC82 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
RC3H1Q5TC82 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RC3H1Q5TC82 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RC3H1Q5TC82 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC18.53■□□□□ 0.56
RC3H1Q5TC82 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
RC3H1Q5TC82 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
RC3H1Q5TC82 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RC3H1Q5TC82 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RC3H1Q5TC82 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
RC3H1Q5TC82 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
RC3H1Q5TC82 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RC3H1Q5TC82 GAS5-209ENST00000430245 723 ntTSL 3 BASIC18.53■□□□□ 0.56
RC3H1Q5TC82 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC18.53■□□□□ 0.56
RC3H1Q5TC82 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC18.53■□□□□ 0.56
RC3H1Q5TC82 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC18.53■□□□□ 0.56
RC3H1Q5TC82 NSD1-211ENST00000511258 809 ntTSL 3 BASIC18.53■□□□□ 0.56
RC3H1Q5TC82 AP002353.1-201ENST00000528257 1599 ntBASIC18.53■□□□□ 0.56
RC3H1Q5TC82 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC18.53■□□□□ 0.56
RC3H1Q5TC82 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC18.53■□□□□ 0.56
RC3H1Q5TC82 MIR2392-201ENST00000584881 84 ntBASIC18.53■□□□□ 0.56
RC3H1Q5TC82 AP000322.3-201ENST00000608665 388 ntBASIC18.53■□□□□ 0.56
RC3H1Q5TC82 AC007250.1-201ENST00000608934 338 ntBASIC18.53■□□□□ 0.56
RC3H1Q5TC82 MYOZ3-209ENST00000615557 1031 ntTSL 2 BASIC18.53■□□□□ 0.56
RC3H1Q5TC82 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RC3H1Q5TC82 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
RC3H1Q5TC82 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC18.53■□□□□ 0.56
RC3H1Q5TC82 AL136172.1-201ENST00000598590 1394 ntBASIC18.53■□□□□ 0.56
RC3H1Q5TC82 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
RC3H1Q5TC82 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
RC3H1Q5TC82 AL365203.3-201ENST00000609742 2057 ntBASIC18.53■□□□□ 0.56
RC3H1Q5TC82 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
RC3H1Q5TC82 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
RC3H1Q5TC82 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.56
RC3H1Q5TC82 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
RC3H1Q5TC82 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
RC3H1Q5TC82 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC18.52■□□□□ 0.56
RC3H1Q5TC82 AC092135.3-201ENST00000624151 1846 ntBASIC18.52■□□□□ 0.56
RC3H1Q5TC82 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
RC3H1Q5TC82 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
RC3H1Q5TC82 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
RC3H1Q5TC82 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
RC3H1Q5TC82 AC073869.2-201ENST00000417338 1026 ntBASIC18.52■□□□□ 0.56
RC3H1Q5TC82 AC018638.5-201ENST00000450885 754 ntBASIC18.52■□□□□ 0.56
RC3H1Q5TC82 RPL18AP8-201ENST00000486071 528 ntBASIC18.52■□□□□ 0.56
RC3H1Q5TC82 AREG-202ENST00000502307 956 ntTSL 5 BASIC18.52■□□□□ 0.56
RC3H1Q5TC82 AC026410.1-201ENST00000507366 1101 ntBASIC18.52■□□□□ 0.56
RC3H1Q5TC82 RPS23-204ENST00000507980 836 ntTSL 2 BASIC18.52■□□□□ 0.56
RC3H1Q5TC82 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
RC3H1Q5TC82 HERC2P11-201ENST00000562845 725 ntBASIC18.52■□□□□ 0.56
RC3H1Q5TC82 AC100756.2-201ENST00000569537 736 ntBASIC18.52■□□□□ 0.56
RC3H1Q5TC82 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC18.52■□□□□ 0.56
RC3H1Q5TC82 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC18.52■□□□□ 0.56
RC3H1Q5TC82 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
RC3H1Q5TC82 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
RC3H1Q5TC82 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC18.52■□□□□ 0.55
RC3H1Q5TC82 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC18.52■□□□□ 0.55
RC3H1Q5TC82 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
RC3H1Q5TC82 C18orf15-201ENST00000623680 2534 ntBASIC18.52■□□□□ 0.55
RC3H1Q5TC82 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
RC3H1Q5TC82 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
RC3H1Q5TC82 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
RC3H1Q5TC82 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
RC3H1Q5TC82 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC18.52■□□□□ 0.55
RC3H1Q5TC82 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC18.52■□□□□ 0.55
RC3H1Q5TC82 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.55
RC3H1Q5TC82 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms