Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC13.47□□□□□ -0.25
H3F3AP84243 ETV2-208ENST00000621247 941 ntTSL 5 BASIC13.47□□□□□ -0.25
H3F3AP84243 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
H3F3AP84243 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
H3F3AP84243 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
H3F3AP84243 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
H3F3AP84243 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
H3F3AP84243 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
H3F3AP84243 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC13.47□□□□□ -0.25
H3F3AP84243 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC13.47□□□□□ -0.25
H3F3AP84243 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
H3F3AP84243 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC13.47□□□□□ -0.25
H3F3AP84243 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
H3F3AP84243 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC13.47□□□□□ -0.25
H3F3AP84243 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
H3F3AP84243 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
H3F3AP84243 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
H3F3AP84243 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC13.47□□□□□ -0.25
H3F3AP84243 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
H3F3AP84243 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC13.47□□□□□ -0.25
H3F3AP84243 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
H3F3AP84243 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
H3F3AP84243 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
H3F3AP84243 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
H3F3AP84243 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
H3F3AP84243 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
H3F3AP84243 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC13.46□□□□□ -0.25
H3F3AP84243 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
H3F3AP84243 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
H3F3AP84243 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
H3F3AP84243 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
H3F3AP84243 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC13.46□□□□□ -0.25
H3F3AP84243 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
H3F3AP84243 CICP24-201ENST00000605464 2705 ntBASIC13.46□□□□□ -0.25
H3F3AP84243 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
H3F3AP84243 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
H3F3AP84243 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
H3F3AP84243 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.25
H3F3AP84243 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
H3F3AP84243 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
H3F3AP84243 LBX2-201ENST00000341396 886 ntTSL 3 BASIC13.46□□□□□ -0.25
H3F3AP84243 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
H3F3AP84243 SERF2-209ENST00000409646 559 ntTSL 4 BASIC13.46□□□□□ -0.25
H3F3AP84243 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC13.46□□□□□ -0.25
H3F3AP84243 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
H3F3AP84243 C2orf27AP3-201ENST00000434123 579 ntBASIC13.46□□□□□ -0.25
H3F3AP84243 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC13.46□□□□□ -0.25
H3F3AP84243 FO681548.1-201ENST00000455617 1132 ntBASIC13.46□□□□□ -0.25
H3F3AP84243 AC007551.1-201ENST00000457394 519 ntBASIC13.46□□□□□ -0.25
H3F3AP84243 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC13.46□□□□□ -0.25
H3F3AP84243 FTH1P14-201ENST00000482930 551 ntBASIC13.46□□□□□ -0.25
H3F3AP84243 NAA50-208ENST00000497255 789 ntTSL 5 BASIC13.46□□□□□ -0.25
H3F3AP84243 MESTP3-201ENST00000503460 968 ntBASIC13.46□□□□□ -0.25
H3F3AP84243 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC13.46□□□□□ -0.25
H3F3AP84243 RNA5SP486-201ENST00000515961 83 ntBASIC13.46□□□□□ -0.25
H3F3AP84243 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
H3F3AP84243 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC13.46□□□□□ -0.25
H3F3AP84243 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC13.46□□□□□ -0.25
H3F3AP84243 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC13.46□□□□□ -0.25
H3F3AP84243 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC13.46□□□□□ -0.25
H3F3AP84243 ORC6-206ENST00000568364 888 ntTSL 5 BASIC13.46□□□□□ -0.25
H3F3AP84243 AL354718.3-201ENST00000616414 581 ntBASIC13.46□□□□□ -0.25
H3F3AP84243 CR382287.1-201ENST00000623954 586 ntBASIC13.46□□□□□ -0.25
H3F3AP84243 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC13.46□□□□□ -0.25
H3F3AP84243 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC13.46□□□□□ -0.25
H3F3AP84243 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC13.46□□□□□ -0.25
H3F3AP84243 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
H3F3AP84243 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
H3F3AP84243 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC13.46□□□□□ -0.26
H3F3AP84243 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC13.46□□□□□ -0.26
H3F3AP84243 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC13.46□□□□□ -0.26
H3F3AP84243 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC13.46□□□□□ -0.26
H3F3AP84243 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.26
H3F3AP84243 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.26
H3F3AP84243 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.26
H3F3AP84243 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
H3F3AP84243 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC13.46□□□□□ -0.26
H3F3AP84243 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
H3F3AP84243 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
H3F3AP84243 AC097376.2-205ENST00000610159 5334 ntBASIC13.45□□□□□ -0.26
H3F3AP84243 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
H3F3AP84243 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
H3F3AP84243 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
H3F3AP84243 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
H3F3AP84243 CLUHP2-201ENST00000426660 1303 ntBASIC13.45□□□□□ -0.26
H3F3AP84243 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
H3F3AP84243 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
H3F3AP84243 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
H3F3AP84243 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
H3F3AP84243 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
H3F3AP84243 AL009178.2-201ENST00000597278 2719 ntBASIC13.45□□□□□ -0.26
H3F3AP84243 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
H3F3AP84243 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
H3F3AP84243 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
H3F3AP84243 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
H3F3AP84243 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
H3F3AP84243 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
H3F3AP84243 ZBTB12BP-201ENST00000314232 1122 ntBASIC13.45□□□□□ -0.26
H3F3AP84243 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
H3F3AP84243 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 112.4 ms