Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC12.23□□□□□ -0.45
LMO4P61968 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
LMO4P61968 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
LMO4P61968 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
LMO4P61968 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
LMO4P61968 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
LMO4P61968 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC12.23□□□□□ -0.45
LMO4P61968 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
LMO4P61968 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
LMO4P61968 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC12.23□□□□□ -0.45
LMO4P61968 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
LMO4P61968 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
LMO4P61968 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
LMO4P61968 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
LMO4P61968 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC12.23□□□□□ -0.45
LMO4P61968 AL645933.1-201ENST00000440087 609 ntBASIC12.23□□□□□ -0.45
LMO4P61968 AC006335.1-201ENST00000445200 547 ntBASIC12.23□□□□□ -0.45
LMO4P61968 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC12.23□□□□□ -0.45
LMO4P61968 SUPT4H1P2-201ENST00000501248 353 ntBASIC12.23□□□□□ -0.45
LMO4P61968 RCC2P8-201ENST00000502779 1035 ntBASIC12.23□□□□□ -0.45
LMO4P61968 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC12.23□□□□□ -0.45
LMO4P61968 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC12.23□□□□□ -0.45
LMO4P61968 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC12.23□□□□□ -0.45
LMO4P61968 HCG18-245ENST00000602550 559 ntTSL 4 BASIC12.23□□□□□ -0.45
LMO4P61968 MVK-217ENST00000639206 367 ntTSL 5 BASIC12.23□□□□□ -0.45
LMO4P61968 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
LMO4P61968 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC12.23□□□□□ -0.45
LMO4P61968 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC12.23□□□□□ -0.45
LMO4P61968 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC12.23□□□□□ -0.45
LMO4P61968 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
LMO4P61968 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
LMO4P61968 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC12.23□□□□□ -0.45
LMO4P61968 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
LMO4P61968 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
LMO4P61968 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
LMO4P61968 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
LMO4P61968 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
LMO4P61968 AC132872.4-202ENST00000622924 2756 ntBASIC12.23□□□□□ -0.45
LMO4P61968 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
LMO4P61968 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC12.23□□□□□ -0.45
LMO4P61968 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
LMO4P61968 AC105917.1-201ENST00000506637 2539 ntBASIC12.22□□□□□ -0.45
LMO4P61968 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
LMO4P61968 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
LMO4P61968 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
LMO4P61968 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
LMO4P61968 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
LMO4P61968 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
LMO4P61968 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
LMO4P61968 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
LMO4P61968 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
LMO4P61968 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC12.22□□□□□ -0.45
LMO4P61968 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC12.22□□□□□ -0.45
LMO4P61968 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
LMO4P61968 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC12.22□□□□□ -0.45
LMO4P61968 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
LMO4P61968 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
LMO4P61968 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
LMO4P61968 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC12.22□□□□□ -0.45
LMO4P61968 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
LMO4P61968 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
LMO4P61968 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
LMO4P61968 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC12.22□□□□□ -0.45
LMO4P61968 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
LMO4P61968 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC12.22□□□□□ -0.45
LMO4P61968 HLA-DQB2-229ENST00000411527 1059 ntBASIC12.22□□□□□ -0.45
LMO4P61968 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC12.22□□□□□ -0.45
LMO4P61968 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC12.22□□□□□ -0.45
LMO4P61968 AC078875.1-201ENST00000431907 724 ntBASIC12.22□□□□□ -0.45
LMO4P61968 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC12.22□□□□□ -0.45
LMO4P61968 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC12.22□□□□□ -0.45
LMO4P61968 AC134698.3-201ENST00000523880 214 ntBASIC12.22□□□□□ -0.45
LMO4P61968 CCNC-217ENST00000523985 958 ntTSL 2 BASIC12.22□□□□□ -0.45
LMO4P61968 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC12.22□□□□□ -0.45
LMO4P61968 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC12.22□□□□□ -0.45
LMO4P61968 FGFR3P5-201ENST00000564496 886 ntBASIC12.22□□□□□ -0.45
LMO4P61968 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC12.22□□□□□ -0.45
LMO4P61968 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
LMO4P61968 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC12.22□□□□□ -0.45
LMO4P61968 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC12.22□□□□□ -0.45
LMO4P61968 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC12.22□□□□□ -0.45
LMO4P61968 AF254983.2-201ENST00000612331 135 ntBASIC12.22□□□□□ -0.45
LMO4P61968 NAP1L6-202ENST00000641404 1222 ntBASIC12.22□□□□□ -0.45
LMO4P61968 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
LMO4P61968 ZEB1-AS1-208ENST00000607166 2503 ntBASIC12.22□□□□□ -0.45
LMO4P61968 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC12.22□□□□□ -0.45
LMO4P61968 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
LMO4P61968 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
LMO4P61968 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
LMO4P61968 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC12.22□□□□□ -0.45
LMO4P61968 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC12.22□□□□□ -0.45
LMO4P61968 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
LMO4P61968 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
LMO4P61968 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC12.22□□□□□ -0.45
LMO4P61968 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
LMO4P61968 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC12.22□□□□□ -0.45
LMO4P61968 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
LMO4P61968 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
LMO4P61968 AC144522.1-201ENST00000625111 1658 ntBASIC12.22□□□□□ -0.45
LMO4P61968 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms