Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SUMO3P55854 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SUMO3P55854 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SUMO3P55854 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
SUMO3P55854 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC13.59□□□□□ -0.23
SUMO3P55854 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC13.59□□□□□ -0.23
SUMO3P55854 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC13.59□□□□□ -0.23
SUMO3P55854 AC018529.2-202ENST00000611482 3087 ntBASIC13.59□□□□□ -0.23
SUMO3P55854 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SUMO3P55854 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC13.59□□□□□ -0.23
SUMO3P55854 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SUMO3P55854 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
SUMO3P55854 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
SUMO3P55854 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
SUMO3P55854 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SUMO3P55854 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SUMO3P55854 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SUMO3P55854 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC13.59□□□□□ -0.23
SUMO3P55854 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SUMO3P55854 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SUMO3P55854 RN7SKP175-201ENST00000408472 289 ntBASIC13.59□□□□□ -0.23
SUMO3P55854 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SUMO3P55854 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC13.59□□□□□ -0.23
SUMO3P55854 AL590640.2-201ENST00000457038 527 ntBASIC13.59□□□□□ -0.23
SUMO3P55854 GPR53P-205ENST00000457298 1084 ntBASIC13.59□□□□□ -0.23
SUMO3P55854 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
SUMO3P55854 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC13.59□□□□□ -0.23
SUMO3P55854 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
SUMO3P55854 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SUMO3P55854 AC078819.1-201ENST00000547454 765 ntBASIC13.59□□□□□ -0.23
SUMO3P55854 AC012085.1-201ENST00000548270 765 ntBASIC13.59□□□□□ -0.23
SUMO3P55854 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC13.59□□□□□ -0.23
SUMO3P55854 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
SUMO3P55854 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC13.59□□□□□ -0.23
SUMO3P55854 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC13.59□□□□□ -0.23
SUMO3P55854 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC13.59□□□□□ -0.23
SUMO3P55854 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC13.59□□□□□ -0.23
SUMO3P55854 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
SUMO3P55854 FAM45BP-202ENST00000592932 1624 ntBASIC13.59□□□□□ -0.23
SUMO3P55854 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC13.59□□□□□ -0.23
SUMO3P55854 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SUMO3P55854 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
SUMO3P55854 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC13.59□□□□□ -0.23
SUMO3P55854 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SUMO3P55854 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
SUMO3P55854 AC092135.3-201ENST00000624151 1846 ntBASIC13.59□□□□□ -0.23
SUMO3P55854 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SUMO3P55854 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC13.59□□□□□ -0.23
SUMO3P55854 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC13.59□□□□□ -0.23
SUMO3P55854 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
SUMO3P55854 AL354989.2-201ENST00000435838 1540 ntBASIC13.59□□□□□ -0.23
SUMO3P55854 PDIA3P1-201ENST00000471856 1510 ntBASIC13.59□□□□□ -0.23
SUMO3P55854 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SUMO3P55854 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC13.59□□□□□ -0.23
SUMO3P55854 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SUMO3P55854 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SUMO3P55854 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SUMO3P55854 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.23
SUMO3P55854 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
SUMO3P55854 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.23
SUMO3P55854 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC13.58□□□□□ -0.23
SUMO3P55854 TPO-203ENST00000346956 2923 ntTSL 5 BASIC13.58□□□□□ -0.24
SUMO3P55854 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SUMO3P55854 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC13.58□□□□□ -0.24
SUMO3P55854 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC13.58□□□□□ -0.24
SUMO3P55854 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SUMO3P55854 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SUMO3P55854 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
SUMO3P55854 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
SUMO3P55854 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SUMO3P55854 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SUMO3P55854 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC13.58□□□□□ -0.24
SUMO3P55854 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SUMO3P55854 SNX21-203ENST00000372541 771 ntTSL 2 BASIC13.58□□□□□ -0.24
SUMO3P55854 U91328.1-201ENST00000437528 223 ntBASIC13.58□□□□□ -0.24
SUMO3P55854 KLF2P4-201ENST00000451959 1225 ntBASIC13.58□□□□□ -0.24
SUMO3P55854 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC13.58□□□□□ -0.24
SUMO3P55854 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
SUMO3P55854 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
SUMO3P55854 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC13.58□□□□□ -0.24
SUMO3P55854 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC13.58□□□□□ -0.24
SUMO3P55854 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC13.58□□□□□ -0.24
SUMO3P55854 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC13.58□□□□□ -0.24
SUMO3P55854 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SUMO3P55854 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SUMO3P55854 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
SUMO3P55854 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SUMO3P55854 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC13.58□□□□□ -0.24
SUMO3P55854 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC13.58□□□□□ -0.24
SUMO3P55854 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SUMO3P55854 MRPL37P1-201ENST00000592451 1337 ntBASIC13.58□□□□□ -0.24
SUMO3P55854 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SUMO3P55854 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SUMO3P55854 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
SUMO3P55854 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SUMO3P55854 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SUMO3P55854 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SUMO3P55854 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
SUMO3P55854 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC13.57□□□□□ -0.24
SUMO3P55854 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC13.57□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms