Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
RFX3P48380 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC14.22□□□□□ -0.13
RFX3P48380 WASH3P-207ENST00000560956 1394 ntBASIC14.22□□□□□ -0.13
RFX3P48380 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RFX3P48380 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC14.22□□□□□ -0.13
RFX3P48380 C10orf71-201ENST00000374144 5230 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RFX3P48380 CICP23-201ENST00000605013 2741 ntBASIC14.22□□□□□ -0.13
RFX3P48380 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
RFX3P48380 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
RFX3P48380 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC14.22□□□□□ -0.13
RFX3P48380 MROH4P-201ENST00000431302 1578 ntBASIC14.22□□□□□ -0.13
RFX3P48380 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
RFX3P48380 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC14.22□□□□□ -0.13
RFX3P48380 GAB1-202ENST00000262995 7981 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
RFX3P48380 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RFX3P48380 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC14.22□□□□□ -0.13
RFX3P48380 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC14.22□□□□□ -0.13
RFX3P48380 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RFX3P48380 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RFX3P48380 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
RFX3P48380 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
RFX3P48380 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RFX3P48380 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RFX3P48380 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RFX3P48380 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
RFX3P48380 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RFX3P48380 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
RFX3P48380 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RFX3P48380 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
RFX3P48380 C1QBPP1-201ENST00000400117 770 ntBASIC14.22□□□□□ -0.13
RFX3P48380 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
RFX3P48380 PIN1P1-201ENST00000412108 996 ntBASIC14.22□□□□□ -0.13
RFX3P48380 GHSR-202ENST00000427970 912 ntBASIC14.22□□□□□ -0.13
RFX3P48380 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
RFX3P48380 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC14.22□□□□□ -0.13
RFX3P48380 RHOA-206ENST00000454011 889 ntTSL 2 BASIC14.22□□□□□ -0.13
RFX3P48380 AC004066.1-201ENST00000502488 802 ntBASIC14.22□□□□□ -0.13
RFX3P48380 RRP7BP-205ENST00000566851 833 ntBASIC14.22□□□□□ -0.13
RFX3P48380 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC14.22□□□□□ -0.13
RFX3P48380 YTHDF3-AS1-201ENST00000603538 718 ntBASIC14.22□□□□□ -0.13
RFX3P48380 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC14.22□□□□□ -0.13
RFX3P48380 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
RFX3P48380 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC14.22□□□□□ -0.13
RFX3P48380 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
RFX3P48380 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RFX3P48380 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC14.22□□□□□ -0.13
RFX3P48380 DKFZP434A062-201ENST00000573103 5021 ntBASIC14.22□□□□□ -0.13
RFX3P48380 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
RFX3P48380 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RFX3P48380 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RFX3P48380 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC14.22□□□□□ -0.13
RFX3P48380 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC14.22□□□□□ -0.13
RFX3P48380 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RFX3P48380 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
RFX3P48380 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC14.22□□□□□ -0.13
RFX3P48380 DRD5P1-201ENST00000456605 1438 ntBASIC14.22□□□□□ -0.13
RFX3P48380 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
RFX3P48380 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
RFX3P48380 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
RFX3P48380 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
RFX3P48380 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
RFX3P48380 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
RFX3P48380 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC14.22□□□□□ -0.13
RFX3P48380 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RFX3P48380 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC14.21□□□□□ -0.13
RFX3P48380 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
RFX3P48380 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
RFX3P48380 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
RFX3P48380 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
RFX3P48380 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC14.21□□□□□ -0.13
RFX3P48380 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
RFX3P48380 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RFX3P48380 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
RFX3P48380 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RFX3P48380 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
RFX3P48380 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RFX3P48380 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RFX3P48380 NUP133-201ENST00000261396 5207 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RFX3P48380 SLC9A7P1-202ENST00000556476 2239 ntBASIC14.21□□□□□ -0.13
RFX3P48380 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RFX3P48380 AC012508.2-201ENST00000567613 1472 ntBASIC14.21□□□□□ -0.13
RFX3P48380 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
RFX3P48380 MARS-233ENST00000628866 2583 ntTSL 5 BASIC14.21□□□□□ -0.13
RFX3P48380 HIPK3-202ENST00000379016 7345 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RFX3P48380 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC14.21□□□□□ -0.13
RFX3P48380 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC14.21□□□□□ -0.13
RFX3P48380 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC14.21□□□□□ -0.13
RFX3P48380 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RFX3P48380 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RFX3P48380 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RFX3P48380 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RFX3P48380 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC14.21□□□□□ -0.13
RFX3P48380 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
RFX3P48380 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RFX3P48380 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RFX3P48380 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC14.21□□□□□ -0.13
RFX3P48380 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC14.21□□□□□ -0.13
RFX3P48380 AL353779.1-201ENST00000434793 351 ntBASIC14.21□□□□□ -0.13
RFX3P48380 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC14.21□□□□□ -0.13
RFX3P48380 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC14.21□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 82.8 ms