Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AL137793.2-201ENST00000632635 659 ntTSL 3 BASIC19.17■□□□□ 0.66
COL18A1P39060 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC19.17■□□□□ 0.66
COL18A1P39060 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL18A1P39060 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL18A1P39060 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC19.17■□□□□ 0.66
COL18A1P39060 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL18A1P39060 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC19.17■□□□□ 0.66
COL18A1P39060 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC19.17■□□□□ 0.66
COL18A1P39060 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
COL18A1P39060 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL18A1P39060 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC19.17■□□□□ 0.66
COL18A1P39060 OR2K2-201ENST00000302681 1078 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
COL18A1P39060 RNVU1-8-201ENST00000364272 125 ntBASIC19.16■□□□□ 0.66
COL18A1P39060 LCE2C-201ENST00000368783 614 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL18A1P39060 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL18A1P39060 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC19.16■□□□□ 0.66
COL18A1P39060 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC19.16■□□□□ 0.66
COL18A1P39060 AL158166.1-201ENST00000433110 371 ntTSL 2 BASIC19.16■□□□□ 0.66
COL18A1P39060 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC19.16■□□□□ 0.66
COL18A1P39060 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
COL18A1P39060 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC19.16■□□□□ 0.66
COL18A1P39060 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL18A1P39060 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC19.16■□□□□ 0.66
COL18A1P39060 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC19.16■□□□□ 0.66
COL18A1P39060 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL18A1P39060 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL18A1P39060 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC19.16■□□□□ 0.66
COL18A1P39060 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC19.16■□□□□ 0.66
COL18A1P39060 AC019109.1-201ENST00000401725 1874 ntBASIC19.16■□□□□ 0.66
COL18A1P39060 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
COL18A1P39060 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC19.16■□□□□ 0.66
COL18A1P39060 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
COL18A1P39060 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL18A1P39060 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL18A1P39060 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
COL18A1P39060 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
COL18A1P39060 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC19.16■□□□□ 0.66
COL18A1P39060 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL18A1P39060 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC19.16■□□□□ 0.66
COL18A1P39060 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC19.16■□□□□ 0.66
COL18A1P39060 AC093673.1-201ENST00000429630 648 ntTSL 2 BASIC19.16■□□□□ 0.66
COL18A1P39060 EMP1-203ENST00000431267 1039 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL18A1P39060 AL161932.2-201ENST00000435436 679 ntBASIC19.16■□□□□ 0.66
COL18A1P39060 RPS23-207ENST00000511844 530 ntTSL 2 BASIC19.16■□□□□ 0.66
COL18A1P39060 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
COL18A1P39060 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC19.16■□□□□ 0.66
COL18A1P39060 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC19.16■□□□□ 0.66
COL18A1P39060 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC19.16■□□□□ 0.66
COL18A1P39060 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL18A1P39060 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC19.16■□□□□ 0.66
COL18A1P39060 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC19.15■□□□□ 0.66
COL18A1P39060 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL18A1P39060 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL18A1P39060 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL18A1P39060 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL18A1P39060 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL18A1P39060 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL18A1P39060 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL18A1P39060 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
COL18A1P39060 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
COL18A1P39060 SERF2-206ENST00000409291 807 ntTSL 3 BASIC19.15■□□□□ 0.66
COL18A1P39060 AL391839.2-201ENST00000412085 383 ntTSL 5 BASIC19.15■□□□□ 0.66
COL18A1P39060 RN7SL23P-201ENST00000484055 275 ntBASIC19.15■□□□□ 0.66
COL18A1P39060 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC19.15■□□□□ 0.66
COL18A1P39060 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC19.15■□□□□ 0.66
COL18A1P39060 AC027139.1-201ENST00000565286 951 ntBASIC19.15■□□□□ 0.66
COL18A1P39060 AC055811.3-201ENST00000584952 686 ntBASIC19.15■□□□□ 0.66
COL18A1P39060 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC19.15■□□□□ 0.66
COL18A1P39060 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL18A1P39060 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL18A1P39060 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL18A1P39060 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC19.15■□□□□ 0.66
COL18A1P39060 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
COL18A1P39060 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL18A1P39060 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL18A1P39060 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL18A1P39060 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL18A1P39060 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC19.15■□□□□ 0.66
COL18A1P39060 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC19.15■□□□□ 0.66
COL18A1P39060 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL18A1P39060 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL18A1P39060 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL18A1P39060 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
COL18A1P39060 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
COL18A1P39060 GDPGP1-201ENST00000329600 1193 ntAPPRIS P1 BASIC19.14■□□□□ 0.66
COL18A1P39060 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC19.14■□□□□ 0.66
COL18A1P39060 SURF4-203ENST00000371991 715 ntTSL 3 BASIC19.14■□□□□ 0.66
COL18A1P39060 PLAC9-203ENST00000372270 534 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.66
COL18A1P39060 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
COL18A1P39060 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
COL18A1P39060 AC244197.1-201ENST00000456494 951 ntBASIC19.14■□□□□ 0.66
COL18A1P39060 AC006529.1-201ENST00000459978 637 ntBASIC19.14■□□□□ 0.66
COL18A1P39060 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC19.14■□□□□ 0.66
COL18A1P39060 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.66
COL18A1P39060 AC226150.1-201ENST00000544259 466 ntBASIC19.14■□□□□ 0.66
COL18A1P39060 DUXAP9-201ENST00000547220 665 ntTSL 3 BASIC19.14■□□□□ 0.66
COL18A1P39060 AC140658.4-201ENST00000561990 352 ntBASIC19.14■□□□□ 0.66
COL18A1P39060 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC19.14■□□□□ 0.66
COL18A1P39060 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL18A1P39060 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms