Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC15.27■□□□□ 0.04
RPA3P35244 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
RPA3P35244 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
RPA3P35244 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC15.27■□□□□ 0.03
RPA3P35244 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.03
RPA3P35244 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
RPA3P35244 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
RPA3P35244 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
RPA3P35244 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
RPA3P35244 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
RPA3P35244 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC15.27■□□□□ 0.03
RPA3P35244 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
RPA3P35244 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC15.27■□□□□ 0.03
RPA3P35244 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC15.27■□□□□ 0.03
RPA3P35244 BTBD7P1-201ENST00000447253 1453 ntBASIC15.27■□□□□ 0.03
RPA3P35244 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
RPA3P35244 DEK-201ENST00000244776 1441 ntTSL 2 BASIC15.26■□□□□ 0.03
RPA3P35244 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC15.26■□□□□ 0.03
RPA3P35244 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
RPA3P35244 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
RPA3P35244 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RPA3P35244 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC15.26■□□□□ 0.03
RPA3P35244 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RPA3P35244 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RPA3P35244 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RPA3P35244 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RPA3P35244 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC15.26■□□□□ 0.03
RPA3P35244 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RPA3P35244 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
RPA3P35244 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC15.26■□□□□ 0.03
RPA3P35244 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC15.26■□□□□ 0.03
RPA3P35244 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
RPA3P35244 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RPA3P35244 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC15.26■□□□□ 0.03
RPA3P35244 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RPA3P35244 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RPA3P35244 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RPA3P35244 AL133267.1-201ENST00000398220 340 ntBASIC15.26■□□□□ 0.03
RPA3P35244 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC15.26■□□□□ 0.03
RPA3P35244 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC15.26■□□□□ 0.03
RPA3P35244 TPT1P11-201ENST00000458482 498 ntBASIC15.26■□□□□ 0.03
RPA3P35244 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RPA3P35244 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC15.26■□□□□ 0.03
RPA3P35244 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC15.26■□□□□ 0.03
RPA3P35244 TIMM17BP1-201ENST00000545713 516 ntBASIC15.26■□□□□ 0.03
RPA3P35244 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC15.26■□□□□ 0.03
RPA3P35244 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
RPA3P35244 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC15.26■□□□□ 0.03
RPA3P35244 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC15.26■□□□□ 0.03
RPA3P35244 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RPA3P35244 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
RPA3P35244 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RPA3P35244 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RPA3P35244 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
RPA3P35244 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RPA3P35244 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RPA3P35244 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
RPA3P35244 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC15.26■□□□□ 0.03
RPA3P35244 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RPA3P35244 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RPA3P35244 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
RPA3P35244 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
RPA3P35244 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RPA3P35244 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC15.26■□□□□ 0.03
RPA3P35244 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RPA3P35244 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RPA3P35244 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RPA3P35244 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
RPA3P35244 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RPA3P35244 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RPA3P35244 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC15.25■□□□□ 0.03
RPA3P35244 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC15.25■□□□□ 0.03
RPA3P35244 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RPA3P35244 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RPA3P35244 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC15.25■□□□□ 0.03
RPA3P35244 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC15.25■□□□□ 0.03
RPA3P35244 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RPA3P35244 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RPA3P35244 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC15.25■□□□□ 0.03
RPA3P35244 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
RPA3P35244 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
RPA3P35244 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC15.25■□□□□ 0.03
RPA3P35244 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RPA3P35244 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RPA3P35244 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
RPA3P35244 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC15.25■□□□□ 0.03
RPA3P35244 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC15.25■□□□□ 0.03
RPA3P35244 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RPA3P35244 INO80C-206ENST00000586489 594 ntTSL 3 BASIC15.25■□□□□ 0.03
RPA3P35244 AC008738.7-201ENST00000609744 511 ntBASIC15.25■□□□□ 0.03
RPA3P35244 TEX48-202ENST00000612244 662 ntTSL 3 BASIC15.25■□□□□ 0.03
RPA3P35244 5S_rRNA.22-201ENST00000614916 106 ntBASIC15.25■□□□□ 0.03
RPA3P35244 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RPA3P35244 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC15.25■□□□□ 0.03
RPA3P35244 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RPA3P35244 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC15.25■□□□□ 0.03
RPA3P35244 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
RPA3P35244 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RPA3P35244 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RPA3P35244 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms