Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.13
BDNFP23560 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
BDNFP23560 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
BDNFP23560 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
BDNFP23560 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC15.83■□□□□ 0.12
BDNFP23560 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
BDNFP23560 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
BDNFP23560 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC15.83■□□□□ 0.12
BDNFP23560 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC15.83■□□□□ 0.12
BDNFP23560 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
BDNFP23560 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
BDNFP23560 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
BDNFP23560 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
BDNFP23560 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC15.83■□□□□ 0.12
BDNFP23560 AL591846.1-201ENST00000451736 433 ntBASIC15.83■□□□□ 0.12
BDNFP23560 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
BDNFP23560 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
BDNFP23560 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC15.83■□□□□ 0.12
BDNFP23560 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC15.83■□□□□ 0.12
BDNFP23560 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
BDNFP23560 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC15.83■□□□□ 0.12
BDNFP23560 AL096828.3-201ENST00000615354 462 ntBASIC15.83■□□□□ 0.12
BDNFP23560 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC15.83■□□□□ 0.12
BDNFP23560 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
BDNFP23560 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.12
BDNFP23560 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC15.83■□□□□ 0.12
BDNFP23560 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC15.83■□□□□ 0.12
BDNFP23560 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
BDNFP23560 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC15.83■□□□□ 0.12
BDNFP23560 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC15.83■□□□□ 0.12
BDNFP23560 LINC00528-201ENST00000600723 2160 ntBASIC15.83■□□□□ 0.12
BDNFP23560 AC003102.2-201ENST00000589195 1469 ntBASIC15.83■□□□□ 0.12
BDNFP23560 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC15.83■□□□□ 0.12
BDNFP23560 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
BDNFP23560 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
BDNFP23560 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC15.83■□□□□ 0.12
BDNFP23560 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
BDNFP23560 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
BDNFP23560 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
BDNFP23560 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
BDNFP23560 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
BDNFP23560 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
BDNFP23560 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
BDNFP23560 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
BDNFP23560 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
BDNFP23560 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
BDNFP23560 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC15.82■□□□□ 0.12
BDNFP23560 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC15.82■□□□□ 0.12
BDNFP23560 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC15.82■□□□□ 0.12
BDNFP23560 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
BDNFP23560 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.12
BDNFP23560 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
BDNFP23560 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
BDNFP23560 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
BDNFP23560 AC079178.1-201ENST00000420915 656 ntBASIC15.82■□□□□ 0.12
BDNFP23560 AC100850.1-201ENST00000506768 649 ntBASIC15.82■□□□□ 0.12
BDNFP23560 NCK2-206ENST00000522586 490 ntTSL 5 BASIC15.82■□□□□ 0.12
BDNFP23560 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
BDNFP23560 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC15.82■□□□□ 0.12
BDNFP23560 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC15.82■□□□□ 0.12
BDNFP23560 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC15.82■□□□□ 0.12
BDNFP23560 AC005695.3-201ENST00000614522 232 ntBASIC15.82■□□□□ 0.12
BDNFP23560 AC244157.2-201ENST00000616239 1006 ntBASIC15.82■□□□□ 0.12
BDNFP23560 GPR182-203ENST00000622922 591 ntBASIC15.82■□□□□ 0.12
BDNFP23560 AP001002.3-201ENST00000623482 206 ntBASIC15.82■□□□□ 0.12
BDNFP23560 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
BDNFP23560 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC15.82■□□□□ 0.12
BDNFP23560 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
BDNFP23560 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC15.82■□□□□ 0.12
BDNFP23560 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
BDNFP23560 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
BDNFP23560 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC15.82■□□□□ 0.12
BDNFP23560 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
BDNFP23560 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
BDNFP23560 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC15.82■□□□□ 0.12
BDNFP23560 SALL4P5-201ENST00000419001 1760 ntBASIC15.82■□□□□ 0.12
BDNFP23560 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
BDNFP23560 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
BDNFP23560 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
BDNFP23560 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC15.82■□□□□ 0.12
BDNFP23560 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
BDNFP23560 GSN-215ENST00000545652 2428 ntTSL 2 BASIC15.82■□□□□ 0.12
BDNFP23560 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
BDNFP23560 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
BDNFP23560 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
BDNFP23560 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
BDNFP23560 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
BDNFP23560 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
BDNFP23560 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
BDNFP23560 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
BDNFP23560 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
BDNFP23560 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
BDNFP23560 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
BDNFP23560 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
BDNFP23560 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
BDNFP23560 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
BDNFP23560 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
BDNFP23560 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
BDNFP23560 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
BDNFP23560 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms