Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
HLA-DOAP06340 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HLA-DOAP06340 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HLA-DOAP06340 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HLA-DOAP06340 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HLA-DOAP06340 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HLA-DOAP06340 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HLA-DOAP06340 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
HLA-DOAP06340 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
HLA-DOAP06340 SKA2-202ENST00000437036 625 ntTSL 2 BASIC17.61■□□□□ 0.41
HLA-DOAP06340 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HLA-DOAP06340 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
HLA-DOAP06340 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
HLA-DOAP06340 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC17.61■□□□□ 0.41
HLA-DOAP06340 MARK2P5-201ENST00000507649 634 ntBASIC17.61■□□□□ 0.41
HLA-DOAP06340 GCOM2-201ENST00000509133 1104 ntBASIC17.61■□□□□ 0.41
HLA-DOAP06340 AC131206.1-201ENST00000538078 1211 ntBASIC17.61■□□□□ 0.41
HLA-DOAP06340 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC17.61■□□□□ 0.41
HLA-DOAP06340 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
HLA-DOAP06340 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC17.61■□□□□ 0.41
HLA-DOAP06340 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC17.61■□□□□ 0.41
HLA-DOAP06340 VPS18-202ENST00000558474 873 ntTSL 3 BASIC17.61■□□□□ 0.41
HLA-DOAP06340 ARL16-210ENST00000574938 751 ntTSL 2 BASIC17.61■□□□□ 0.41
HLA-DOAP06340 MIR3619-201ENST00000579667 83 ntBASIC17.61■□□□□ 0.41
HLA-DOAP06340 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC17.61■□□□□ 0.41
HLA-DOAP06340 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC17.61■□□□□ 0.41
HLA-DOAP06340 BX088702.1-201ENST00000610784 235 ntBASIC17.61■□□□□ 0.41
HLA-DOAP06340 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
HLA-DOAP06340 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC17.61■□□□□ 0.41
HLA-DOAP06340 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HLA-DOAP06340 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC17.61■□□□□ 0.41
HLA-DOAP06340 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC17.61■□□□□ 0.41
HLA-DOAP06340 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HLA-DOAP06340 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC17.61■□□□□ 0.41
HLA-DOAP06340 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HLA-DOAP06340 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC17.61■□□□□ 0.41
HLA-DOAP06340 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HLA-DOAP06340 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
HLA-DOAP06340 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
HLA-DOAP06340 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
HLA-DOAP06340 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
HLA-DOAP06340 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HLA-DOAP06340 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HLA-DOAP06340 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HLA-DOAP06340 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
HLA-DOAP06340 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HLA-DOAP06340 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HLA-DOAP06340 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HLA-DOAP06340 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HLA-DOAP06340 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HLA-DOAP06340 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HLA-DOAP06340 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
HLA-DOAP06340 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
HLA-DOAP06340 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC17.6■□□□□ 0.41
HLA-DOAP06340 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HLA-DOAP06340 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC17.6■□□□□ 0.41
HLA-DOAP06340 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC17.6■□□□□ 0.41
HLA-DOAP06340 Z97180.1-201ENST00000445173 988 ntBASIC17.6■□□□□ 0.41
HLA-DOAP06340 RPL18P13-201ENST00000478088 569 ntBASIC17.6■□□□□ 0.41
HLA-DOAP06340 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC17.6■□□□□ 0.41
HLA-DOAP06340 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC17.6■□□□□ 0.41
HLA-DOAP06340 RHOQP1-201ENST00000555758 579 ntBASIC17.6■□□□□ 0.41
HLA-DOAP06340 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC17.6■□□□□ 0.41
HLA-DOAP06340 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC17.6■□□□□ 0.41
HLA-DOAP06340 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HLA-DOAP06340 AC009884.2-201ENST00000603110 324 ntBASIC17.6■□□□□ 0.41
HLA-DOAP06340 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HLA-DOAP06340 AP001505.2-201ENST00000616815 443 ntBASIC17.6■□□□□ 0.41
HLA-DOAP06340 CU633904.3-201ENST00000624042 1029 ntBASIC17.6■□□□□ 0.41
HLA-DOAP06340 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HLA-DOAP06340 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HLA-DOAP06340 AL008718.2-201ENST00000609206 1313 ntBASIC17.6■□□□□ 0.41
HLA-DOAP06340 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
HLA-DOAP06340 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HLA-DOAP06340 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HLA-DOAP06340 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC17.6■□□□□ 0.41
HLA-DOAP06340 AC244394.1-201ENST00000435000 1665 ntBASIC17.6■□□□□ 0.41
HLA-DOAP06340 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC17.6■□□□□ 0.41
HLA-DOAP06340 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HLA-DOAP06340 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
HLA-DOAP06340 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HLA-DOAP06340 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC17.6■□□□□ 0.41
HLA-DOAP06340 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC17.6■□□□□ 0.41
HLA-DOAP06340 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC17.6■□□□□ 0.41
HLA-DOAP06340 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HLA-DOAP06340 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HLA-DOAP06340 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HLA-DOAP06340 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
HLA-DOAP06340 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC17.6■□□□□ 0.41
HLA-DOAP06340 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
HLA-DOAP06340 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
HLA-DOAP06340 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HLA-DOAP06340 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DOAP06340 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
HLA-DOAP06340 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DOAP06340 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DOAP06340 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DOAP06340 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DOAP06340 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DOAP06340 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms