Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 AC107464.3-201ENST00000609172 737 ntBASIC17.93■□□□□ 0.46
COL4A1P02462 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC17.93■□□□□ 0.46
COL4A1P02462 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
COL4A1P02462 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC17.92■□□□□ 0.46
COL4A1P02462 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
COL4A1P02462 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL4A1P02462 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL4A1P02462 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL4A1P02462 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL4A1P02462 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL4A1P02462 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC17.92■□□□□ 0.46
COL4A1P02462 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL4A1P02462 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL4A1P02462 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
COL4A1P02462 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC17.92■□□□□ 0.46
COL4A1P02462 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC17.92■□□□□ 0.46
COL4A1P02462 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL4A1P02462 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC17.92■□□□□ 0.46
COL4A1P02462 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC17.92■□□□□ 0.46
COL4A1P02462 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC17.92■□□□□ 0.46
COL4A1P02462 GMFG-209ENST00000600322 622 ntTSL 5 BASIC17.92■□□□□ 0.46
COL4A1P02462 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC17.92■□□□□ 0.46
COL4A1P02462 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
COL4A1P02462 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL4A1P02462 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
COL4A1P02462 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL4A1P02462 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC17.92■□□□□ 0.46
COL4A1P02462 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL4A1P02462 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL4A1P02462 KRT18P9-201ENST00000604826 1300 ntBASIC17.92■□□□□ 0.46
COL4A1P02462 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL4A1P02462 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
COL4A1P02462 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC17.92■□□□□ 0.46
COL4A1P02462 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC17.91■□□□□ 0.46
COL4A1P02462 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC17.91■□□□□ 0.46
COL4A1P02462 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
COL4A1P02462 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC17.91■□□□□ 0.46
COL4A1P02462 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
COL4A1P02462 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL4A1P02462 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
COL4A1P02462 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
COL4A1P02462 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
COL4A1P02462 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL4A1P02462 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL4A1P02462 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL4A1P02462 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL4A1P02462 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL4A1P02462 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
COL4A1P02462 PTK2-225ENST00000520892 571 ntTSL 4 BASIC17.91■□□□□ 0.46
COL4A1P02462 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC17.91■□□□□ 0.46
COL4A1P02462 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC17.91■□□□□ 0.46
COL4A1P02462 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC17.91■□□□□ 0.46
COL4A1P02462 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC17.91■□□□□ 0.46
COL4A1P02462 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC17.91■□□□□ 0.46
COL4A1P02462 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL4A1P02462 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL4A1P02462 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL4A1P02462 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL4A1P02462 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL4A1P02462 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC17.91■□□□□ 0.46
COL4A1P02462 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
COL4A1P02462 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC17.91■□□□□ 0.46
COL4A1P02462 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL4A1P02462 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL4A1P02462 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL4A1P02462 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC17.9■□□□□ 0.46
COL4A1P02462 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
COL4A1P02462 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL4A1P02462 AL357563.1-201ENST00000404728 395 ntBASIC17.9■□□□□ 0.46
COL4A1P02462 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC17.9■□□□□ 0.46
COL4A1P02462 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC17.9■□□□□ 0.46
COL4A1P02462 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC17.9■□□□□ 0.46
COL4A1P02462 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL4A1P02462 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
COL4A1P02462 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL4A1P02462 DNM1P30-201ENST00000563586 452 ntBASIC17.9■□□□□ 0.46
COL4A1P02462 AC007326.1-201ENST00000604539 458 ntBASIC17.9■□□□□ 0.46
COL4A1P02462 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
COL4A1P02462 AL161773.1-201ENST00000624845 863 ntBASIC17.9■□□□□ 0.46
COL4A1P02462 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL4A1P02462 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL4A1P02462 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC17.9■□□□□ 0.46
COL4A1P02462 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC17.9■□□□□ 0.46
COL4A1P02462 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL4A1P02462 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC17.9■□□□□ 0.46
COL4A1P02462 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
COL4A1P02462 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC17.9■□□□□ 0.46
COL4A1P02462 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL4A1P02462 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC17.9■□□□□ 0.46
COL4A1P02462 AC015688.4-201ENST00000580780 1647 ntBASIC17.9■□□□□ 0.46
COL4A1P02462 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL4A1P02462 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL4A1P02462 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL4A1P02462 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL4A1P02462 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL4A1P02462 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL4A1P02462 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL4A1P02462 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC17.9■□□□□ 0.46
COL4A1P02462 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC17.9■□□□□ 0.46
COL4A1P02462 RHEB-207ENST00000496004 744 ntTSL 2 BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 161.4 ms