Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 CR392039.1-201ENST00000623217 204 ntBASIC20.52■□□□□ 0.87
NPHP4O75161 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.87
NPHP4O75161 AL591122.2-201ENST00000624125 1853 ntBASIC20.52■□□□□ 0.87
NPHP4O75161 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
NPHP4O75161 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
NPHP4O75161 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NPHP4O75161 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NPHP4O75161 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC20.51■□□□□ 0.87
NPHP4O75161 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NPHP4O75161 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NPHP4O75161 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NPHP4O75161 SUPT20HL2-201ENST00000486479 2409 ntBASIC20.51■□□□□ 0.87
NPHP4O75161 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
NPHP4O75161 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
NPHP4O75161 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC20.51■□□□□ 0.87
NPHP4O75161 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
NPHP4O75161 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NPHP4O75161 PPP1R2P4-201ENST00000424051 595 ntBASIC20.51■□□□□ 0.87
NPHP4O75161 AL451069.3-201ENST00000450206 1013 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NPHP4O75161 HIST1H2APS2-201ENST00000454426 370 ntBASIC20.51■□□□□ 0.87
NPHP4O75161 AC092612.1-201ENST00000514501 998 ntBASIC20.51■□□□□ 0.87
NPHP4O75161 NR4A1-209ENST00000548232 1101 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NPHP4O75161 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NPHP4O75161 Metazoa_SRP.157-201ENST00000622819 262 ntBASIC20.51■□□□□ 0.87
NPHP4O75161 LINC01002-234ENST00000633808 848 ntTSL 5 BASIC20.51■□□□□ 0.87
NPHP4O75161 OSMR-AS1-204ENST00000636516 850 ntTSL 5 BASIC20.51■□□□□ 0.87
NPHP4O75161 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NPHP4O75161 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NPHP4O75161 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC20.51■□□□□ 0.87
NPHP4O75161 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC20.5■□□□□ 0.87
NPHP4O75161 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NPHP4O75161 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NPHP4O75161 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
NPHP4O75161 PPHLN1-223ENST00000610488 1521 ntTSL 5 BASIC20.5■□□□□ 0.87
NPHP4O75161 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NPHP4O75161 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NPHP4O75161 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
NPHP4O75161 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
NPHP4O75161 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
NPHP4O75161 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NPHP4O75161 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC20.5■□□□□ 0.87
NPHP4O75161 LCN6-201ENST00000341206 717 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NPHP4O75161 KRT18P4-201ENST00000422599 1288 ntBASIC20.5■□□□□ 0.87
NPHP4O75161 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC20.5■□□□□ 0.87
NPHP4O75161 MED11-202ENST00000573708 802 ntTSL 2 BASIC20.5■□□□□ 0.87
NPHP4O75161 NT5C-204ENST00000578337 582 ntTSL 2 BASIC20.5■□□□□ 0.87
NPHP4O75161 AC073578.2-201ENST00000618927 464 ntTSL 4 BASIC20.5■□□□□ 0.87
NPHP4O75161 ADAMTS9-AS1-216ENST00000626280 882 ntTSL 5 BASIC20.5■□□□□ 0.87
NPHP4O75161 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NPHP4O75161 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC20.5■□□□□ 0.87
NPHP4O75161 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC20.5■□□□□ 0.87
NPHP4O75161 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC20.5■□□□□ 0.87
NPHP4O75161 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
NPHP4O75161 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC20.5■□□□□ 0.87
NPHP4O75161 BLK-205ENST00000529894 2017 ntTSL 5 BASIC20.49■□□□□ 0.87
NPHP4O75161 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
NPHP4O75161 ZDHHC6-201ENST00000369404 1721 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP4O75161 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP4O75161 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC20.49■□□□□ 0.87
NPHP4O75161 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.49■□□□□ 0.87
NPHP4O75161 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC20.49■□□□□ 0.87
NPHP4O75161 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP4O75161 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP4O75161 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP4O75161 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP4O75161 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP4O75161 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP4O75161 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP4O75161 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC20.49■□□□□ 0.87
NPHP4O75161 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP4O75161 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP4O75161 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP4O75161 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP4O75161 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
NPHP4O75161 DDX39B-AS1-208ENST00000420520 516 ntTSL 3 BASIC20.49■□□□□ 0.87
NPHP4O75161 VENTXP3-201ENST00000546480 773 ntBASIC20.49■□□□□ 0.87
NPHP4O75161 DUT-207ENST00000559416 635 ntTSL 2 BASIC20.49■□□□□ 0.87
NPHP4O75161 NDUFB10P1-201ENST00000567319 521 ntBASIC20.49■□□□□ 0.87
NPHP4O75161 AC019294.2-203ENST00000569596 594 ntTSL 3 BASIC20.49■□□□□ 0.87
NPHP4O75161 FBXO36P1-201ENST00000579006 471 ntBASIC20.49■□□□□ 0.87
NPHP4O75161 AC110057.1-201ENST00000636031 898 ntBASIC20.49■□□□□ 0.87
NPHP4O75161 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC20.49■□□□□ 0.87
NPHP4O75161 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC20.49■□□□□ 0.87
NPHP4O75161 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP4O75161 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
NPHP4O75161 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
NPHP4O75161 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
NPHP4O75161 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC20.49■□□□□ 0.87
NPHP4O75161 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NPHP4O75161 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC20.48■□□□□ 0.87
NPHP4O75161 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NPHP4O75161 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
NPHP4O75161 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
NPHP4O75161 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC20.48■□□□□ 0.87
NPHP4O75161 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC20.48■□□□□ 0.87
NPHP4O75161 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
NPHP4O75161 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC20.48■□□□□ 0.87
NPHP4O75161 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
NPHP4O75161 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NPHP4O75161 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms