Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
CHMP2AO43633 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CHMP2AO43633 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CHMP2AO43633 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC16.93■□□□□ 0.3
CHMP2AO43633 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
CHMP2AO43633 AP003171.2-201ENST00000528208 925 ntBASIC16.93■□□□□ 0.3
CHMP2AO43633 AL583810.1-201ENST00000553344 1045 ntBASIC16.93■□□□□ 0.3
CHMP2AO43633 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC16.93■□□□□ 0.3
CHMP2AO43633 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC16.93■□□□□ 0.3
CHMP2AO43633 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC16.93■□□□□ 0.3
CHMP2AO43633 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CHMP2AO43633 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
CHMP2AO43633 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC16.93■□□□□ 0.3
CHMP2AO43633 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
CHMP2AO43633 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC16.93■□□□□ 0.3
CHMP2AO43633 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CHMP2AO43633 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC16.93■□□□□ 0.3
CHMP2AO43633 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
CHMP2AO43633 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC16.93■□□□□ 0.3
CHMP2AO43633 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
CHMP2AO43633 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
CHMP2AO43633 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC16.93■□□□□ 0.3
CHMP2AO43633 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
CHMP2AO43633 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
CHMP2AO43633 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
CHMP2AO43633 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC16.93■□□□□ 0.3
CHMP2AO43633 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CHMP2AO43633 INE2-201ENST00000630399 1874 ntBASIC16.93■□□□□ 0.3
CHMP2AO43633 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC16.92■□□□□ 0.3
CHMP2AO43633 ANKRD30BP2-201ENST00000435744 1610 ntBASIC16.92■□□□□ 0.3
CHMP2AO43633 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHMP2AO43633 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHMP2AO43633 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CHMP2AO43633 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
CHMP2AO43633 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC16.92■□□□□ 0.3
CHMP2AO43633 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHMP2AO43633 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHMP2AO43633 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHMP2AO43633 TPO-203ENST00000346956 2923 ntTSL 5 BASIC16.92■□□□□ 0.3
CHMP2AO43633 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHMP2AO43633 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHMP2AO43633 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHMP2AO43633 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC16.92■□□□□ 0.3
CHMP2AO43633 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
CHMP2AO43633 CD8B2-202ENST00000417670 633 ntBASIC16.92■□□□□ 0.3
CHMP2AO43633 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CHMP2AO43633 COX5BP1-201ENST00000507622 393 ntBASIC16.92■□□□□ 0.3
CHMP2AO43633 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC16.92■□□□□ 0.3
CHMP2AO43633 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC16.92■□□□□ 0.3
CHMP2AO43633 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHMP2AO43633 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
CHMP2AO43633 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CHMP2AO43633 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
CHMP2AO43633 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHMP2AO43633 AC020910.5-201ENST00000623668 1865 ntBASIC16.92■□□□□ 0.3
CHMP2AO43633 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CHMP2AO43633 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHMP2AO43633 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
CHMP2AO43633 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHMP2AO43633 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC16.92■□□□□ 0.3
CHMP2AO43633 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHMP2AO43633 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHMP2AO43633 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHMP2AO43633 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHMP2AO43633 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
CHMP2AO43633 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHMP2AO43633 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC16.91■□□□□ 0.3
CHMP2AO43633 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CHMP2AO43633 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHMP2AO43633 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC16.91■□□□□ 0.3
CHMP2AO43633 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
CHMP2AO43633 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC16.91■□□□□ 0.3
CHMP2AO43633 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC16.91■□□□□ 0.3
CHMP2AO43633 SF1-209ENST00000433274 2317 ntTSL 2 BASIC16.91■□□□□ 0.3
CHMP2AO43633 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHMP2AO43633 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHMP2AO43633 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC16.91■□□□□ 0.3
CHMP2AO43633 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CHMP2AO43633 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
CHMP2AO43633 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHMP2AO43633 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CHMP2AO43633 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
CHMP2AO43633 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CHMP2AO43633 FTLP10-202ENST00000505798 471 ntBASIC16.91■□□□□ 0.3
CHMP2AO43633 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
CHMP2AO43633 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC16.91■□□□□ 0.3
CHMP2AO43633 AC106820.3-201ENST00000561653 397 ntBASIC16.91■□□□□ 0.3
CHMP2AO43633 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC16.91■□□□□ 0.3
CHMP2AO43633 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHMP2AO43633 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC16.91■□□□□ 0.3
CHMP2AO43633 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CHMP2AO43633 TECR-220ENST00000600083 1204 ntTSL 2 BASIC16.91■□□□□ 0.3
CHMP2AO43633 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHMP2AO43633 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC16.91■□□□□ 0.3
CHMP2AO43633 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHMP2AO43633 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
CHMP2AO43633 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHMP2AO43633 FKBP4P6-201ENST00000457486 1332 ntBASIC16.91■□□□□ 0.3
CHMP2AO43633 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC16.91■□□□□ 0.3
CHMP2AO43633 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 72.7 ms