Protein–RNA interactions for Protein: O14983

ATP2A1, Sarcoplasmic/endoplasmic reticulum calcium ATPase 1, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATP2A1O14983 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
ATP2A1O14983 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ATP2A1O14983 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
ATP2A1O14983 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ATP2A1O14983 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
ATP2A1O14983 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC17.15■□□□□ 0.34
ATP2A1O14983 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
ATP2A1O14983 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
ATP2A1O14983 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
ATP2A1O14983 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ATP2A1O14983 AC105917.1-201ENST00000506637 2539 ntBASIC17.14■□□□□ 0.33
ATP2A1O14983 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
ATP2A1O14983 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
ATP2A1O14983 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
ATP2A1O14983 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
ATP2A1O14983 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ATP2A1O14983 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
ATP2A1O14983 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC17.14■□□□□ 0.33
ATP2A1O14983 AC023090.2-201ENST00000625182 2110 ntBASIC17.14■□□□□ 0.33
ATP2A1O14983 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
ATP2A1O14983 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ATP2A1O14983 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
ATP2A1O14983 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
ATP2A1O14983 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC17.14■□□□□ 0.33
ATP2A1O14983 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
ATP2A1O14983 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
ATP2A1O14983 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC17.14■□□□□ 0.33
ATP2A1O14983 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC17.14■□□□□ 0.33
ATP2A1O14983 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC17.14■□□□□ 0.33
ATP2A1O14983 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC17.14■□□□□ 0.33
ATP2A1O14983 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
ATP2A1O14983 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ATP2A1O14983 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC17.14■□□□□ 0.33
ATP2A1O14983 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
ATP2A1O14983 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC17.14■□□□□ 0.33
ATP2A1O14983 AC097724.1-201ENST00000609581 426 ntBASIC17.14■□□□□ 0.33
ATP2A1O14983 AC090164.2-201ENST00000611487 516 ntBASIC17.14■□□□□ 0.33
ATP2A1O14983 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC17.14■□□□□ 0.33
ATP2A1O14983 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ATP2A1O14983 AL136295.7-201ENST00000619226 1200 ntBASIC17.14■□□□□ 0.33
ATP2A1O14983 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC17.14■□□□□ 0.33
ATP2A1O14983 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC17.14■□□□□ 0.33
ATP2A1O14983 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC17.14■□□□□ 0.33
ATP2A1O14983 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ATP2A1O14983 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
ATP2A1O14983 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ATP2A1O14983 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ATP2A1O14983 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ATP2A1O14983 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
ATP2A1O14983 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC17.14■□□□□ 0.33
ATP2A1O14983 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
ATP2A1O14983 WASH3P-207ENST00000560956 1394 ntBASIC17.14■□□□□ 0.33
ATP2A1O14983 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
ATP2A1O14983 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ATP2A1O14983 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC17.13■□□□□ 0.33
ATP2A1O14983 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
ATP2A1O14983 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC17.13■□□□□ 0.33
ATP2A1O14983 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
ATP2A1O14983 AC132872.4-202ENST00000622924 2756 ntBASIC17.13■□□□□ 0.33
ATP2A1O14983 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ATP2A1O14983 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ATP2A1O14983 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
ATP2A1O14983 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ATP2A1O14983 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
ATP2A1O14983 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ATP2A1O14983 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
ATP2A1O14983 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC17.13■□□□□ 0.33
ATP2A1O14983 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
ATP2A1O14983 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
ATP2A1O14983 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
ATP2A1O14983 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ATP2A1O14983 AC012441.2-201ENST00000444843 739 ntBASIC17.13■□□□□ 0.33
ATP2A1O14983 AC125604.1-201ENST00000496255 707 ntBASIC17.13■□□□□ 0.33
ATP2A1O14983 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC17.13■□□□□ 0.33
ATP2A1O14983 SNORD3B-2-202ENST00000571722 791 ntBASIC17.13■□□□□ 0.33
ATP2A1O14983 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC17.13■□□□□ 0.33
ATP2A1O14983 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC17.13■□□□□ 0.33
ATP2A1O14983 CU633904.3-201ENST00000624042 1029 ntBASIC17.13■□□□□ 0.33
ATP2A1O14983 PAUPAR-201ENST00000630360 2965 ntBASIC17.13■□□□□ 0.33
ATP2A1O14983 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ATP2A1O14983 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
ATP2A1O14983 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
ATP2A1O14983 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ATP2A1O14983 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ATP2A1O14983 AC007326.2-201ENST00000624224 7579 ntBASIC17.13■□□□□ 0.33
ATP2A1O14983 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
ATP2A1O14983 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC17.13■□□□□ 0.33
ATP2A1O14983 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC17.13■□□□□ 0.33
ATP2A1O14983 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC17.12■□□□□ 0.33
ATP2A1O14983 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
ATP2A1O14983 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
ATP2A1O14983 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ATP2A1O14983 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ATP2A1O14983 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
ATP2A1O14983 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ATP2A1O14983 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
ATP2A1O14983 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ATP2A1O14983 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
ATP2A1O14983 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ATP2A1O14983 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 59.3 ms