Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 RARS-210ENST00000626454 177 ntTSL 5 BASIC24.96■■□□□ 1.59
CUX2O14529 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC24.96■■□□□ 1.59
CUX2O14529 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC24.95■■□□□ 1.59
CUX2O14529 TEKT4P2-202ENST00000559466 1312 ntBASIC24.95■■□□□ 1.59
CUX2O14529 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC24.95■■□□□ 1.58
CUX2O14529 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC24.95■■□□□ 1.58
CUX2O14529 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
CUX2O14529 ECH1-201ENST00000221418 1411 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
CUX2O14529 RBFOX1-214ENST00000552089 1430 ntTSL 5 BASIC24.95■■□□□ 1.58
CUX2O14529 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC24.95■■□□□ 1.58
CUX2O14529 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
CUX2O14529 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC24.95■■□□□ 1.58
CUX2O14529 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC24.95■■□□□ 1.58
CUX2O14529 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
CUX2O14529 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC24.95■■□□□ 1.58
CUX2O14529 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC24.95■■□□□ 1.58
CUX2O14529 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC24.95■■□□□ 1.58
CUX2O14529 THAP4-203ENST00000402545 833 ntTSL 5 BASIC24.95■■□□□ 1.58
CUX2O14529 CBR3-AS1-202ENST00000427491 741 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
CUX2O14529 IFNWP2-201ENST00000431203 580 ntBASIC24.95■■□□□ 1.58
CUX2O14529 AC022121.1-201ENST00000484584 579 ntBASIC24.95■■□□□ 1.58
CUX2O14529 AC092910.2-201ENST00000491262 348 ntBASIC24.95■■□□□ 1.58
CUX2O14529 AC022447.5-201ENST00000504817 392 ntBASIC24.95■■□□□ 1.58
CUX2O14529 AC131206.1-201ENST00000538078 1211 ntBASIC24.95■■□□□ 1.58
CUX2O14529 AL451165.2-201ENST00000606971 718 ntTSL 2 BASIC24.95■■□□□ 1.58
CUX2O14529 CBR3-AS1-207ENST00000608641 777 ntTSL 5 BASIC24.95■■□□□ 1.58
CUX2O14529 GGNBP1-204ENST00000613113 887 ntBASIC24.95■■□□□ 1.58
CUX2O14529 AL513478.2-202ENST00000621949 835 ntTSL 3 BASIC24.95■■□□□ 1.58
CUX2O14529 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
CUX2O14529 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC24.95■■□□□ 1.58
CUX2O14529 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
CUX2O14529 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
CUX2O14529 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
CUX2O14529 AC006449.5-201ENST00000610658 2098 ntBASIC24.94■■□□□ 1.58
CUX2O14529 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC24.94■■□□□ 1.58
CUX2O14529 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC24.94■■□□□ 1.58
CUX2O14529 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC24.94■■□□□ 1.58
CUX2O14529 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
CUX2O14529 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
CUX2O14529 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC24.94■■□□□ 1.58
CUX2O14529 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
CUX2O14529 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC24.94■■□□□ 1.58
CUX2O14529 SKOR2-201ENST00000400404 891 ntAPPRIS P3 TSL 1 (best) BASIC24.94■■□□□ 1.58
CUX2O14529 HNRNPABP1-201ENST00000406003 734 ntBASIC24.94■■□□□ 1.58
CUX2O14529 COPS7B-204ENST00000409091 806 ntTSL 5 BASIC24.94■■□□□ 1.58
CUX2O14529 GOLGA6L16P-201ENST00000441780 1299 ntBASIC24.94■■□□□ 1.58
CUX2O14529 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
CUX2O14529 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
CUX2O14529 AC091588.3-201ENST00000583442 770 ntTSL 3 BASIC24.94■■□□□ 1.58
CUX2O14529 AC022098.2-201ENST00000590528 518 ntTSL 4 BASIC24.94■■□□□ 1.58
CUX2O14529 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
CUX2O14529 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
CUX2O14529 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC24.94■■□□□ 1.58
CUX2O14529 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC24.94■■□□□ 1.58
CUX2O14529 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC24.94■■□□□ 1.58
CUX2O14529 MKRN2-202ENST00000411987 1436 ntTSL 2 BASIC24.94■■□□□ 1.58
CUX2O14529 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC24.93■■□□□ 1.58
CUX2O14529 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
CUX2O14529 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
CUX2O14529 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
CUX2O14529 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
CUX2O14529 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC24.93■■□□□ 1.58
CUX2O14529 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC24.93■■□□□ 1.58
CUX2O14529 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC24.93■■□□□ 1.58
CUX2O14529 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC24.93■■□□□ 1.58
CUX2O14529 PCDH8P1-201ENST00000428983 2773 ntBASIC24.93■■□□□ 1.58
CUX2O14529 WASIR1-201ENST00000399966 1054 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
CUX2O14529 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
CUX2O14529 SNRPCP15-201ENST00000424055 192 ntBASIC24.93■■□□□ 1.58
CUX2O14529 POLR2LP1-206ENST00000444785 187 ntBASIC24.93■■□□□ 1.58
CUX2O14529 POLR3G-207ENST00000514483 682 ntTSL 3 BASIC24.93■■□□□ 1.58
CUX2O14529 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC24.93■■□□□ 1.58
CUX2O14529 AC012617.1-202ENST00000586488 509 ntTSL 2 BASIC24.93■■□□□ 1.58
CUX2O14529 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC24.93■■□□□ 1.58
CUX2O14529 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC24.93■■□□□ 1.58
CUX2O14529 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC24.93■■□□□ 1.58
CUX2O14529 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC24.93■■□□□ 1.58
CUX2O14529 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC24.93■■□□□ 1.58
CUX2O14529 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC24.93■■□□□ 1.58
CUX2O14529 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
CUX2O14529 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC24.93■■□□□ 1.58
CUX2O14529 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
CUX2O14529 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
CUX2O14529 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
CUX2O14529 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC24.92■■□□□ 1.58
CUX2O14529 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC24.92■■□□□ 1.58
CUX2O14529 ALG1L15P-201ENST00000482834 794 ntBASIC24.92■■□□□ 1.58
CUX2O14529 KRT18P37-201ENST00000520711 1282 ntBASIC24.92■■□□□ 1.58
CUX2O14529 LINC01490-202ENST00000551399 1260 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
CUX2O14529 RN7SL440P-201ENST00000577855 343 ntBASIC24.92■■□□□ 1.58
CUX2O14529 TYMSP2-201ENST00000589501 424 ntBASIC24.92■■□□□ 1.58
CUX2O14529 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC24.92■■□□□ 1.58
CUX2O14529 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
CUX2O14529 GPN3-203ENST00000543199 1604 ntTSL 5 BASIC24.92■■□□□ 1.58
CUX2O14529 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC24.92■■□□□ 1.58
CUX2O14529 LYRM1-202ENST00000396052 1659 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
CUX2O14529 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
CUX2O14529 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC24.92■■□□□ 1.58
CUX2O14529 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
CUX2O14529 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC24.92■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 58.1 ms