Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 SERF2-209ENST00000409646 559 ntTSL 4 BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 ZNF767P-206ENST00000513792 565 ntBASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 NOP2-211ENST00000540228 668 ntTSL 2 BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 RNF41-210ENST00000552244 716 ntTSL 3 BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 AC104982.3-201ENST00000581995 514 ntBASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 AL118558.3-201ENST00000607414 1079 ntBASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 REXO1L2P-201ENST00000425429 2069 ntBASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 ING5-213ENST00000636051 4199 ntTSL 5 BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 NDUFAB1P1-201ENST00000404262 460 ntBASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 CD74-212ENST00000524315 584 ntTSL 5 BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 AL022328.3-201ENST00000607943 679 ntBASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 AC244093.1-201ENST00000610837 814 ntBASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 AP001002.3-201ENST00000623482 206 ntBASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 AC011840.2-201ENST00000563063 1520 ntBASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 GRN-222ENST00000639447 1314 ntTSL 2 BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CLCF1Q9UBD9 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 63.3 ms