Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 KIF3A-201ENST00000378735 3266 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 PES1-204ENST00000402284 2144 ntTSL 5 BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 RBPMS2P1-201ENST00000437762 623 ntBASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 INO80C-210ENST00000590757 595 ntTSL 2 BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 AL589739.1-201ENST00000607720 493 ntBASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 SPOCD1-201ENST00000257100 2472 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC28BQ9BUN5 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 MEST-204ENST00000393187 2380 ntAPPRIS ALT1 TSL 5 BASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 CETN4P-206ENST00000642099 2168 ntBASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 IMP4-203ENST00000409935 958 ntTSL 5 BASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 AL627223.1-201ENST00000416693 442 ntBASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 AC004832.2-201ENST00000426397 482 ntBASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 SPOCK3-218ENST00000511531 2908 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 SCNN1A-201ENST00000228916 3135 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC28BQ9BUN5 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC14.68□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms